Pierrick Wainschtein
University of Queensland
7 Papers
Pierrick Wainschtein is an academic researcher from University of Queensland. The author has contributed to research in topics: Gene & Biology. The author has an hindex of 2, co-authored 2 publications.
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Papers
Recovery of trait heritability from whole genome sequence data
Pierrick Wainschtein,Deepti Jain,Loic Yengo,Zhili Zheng,L. Adrienne Cupples,Aladdin H. Shadyab,Barbara McKnight,Benjamin Shoemaker,Braxton D. Mitchell,Braxton D. Mitchell,Bruce M. Psaty,Bruce M. Psaty,Charles Kooperberg,Dan M. Roden,Dawood Darbar,Donna K. Arnett,Elizabeth A. Regan,Eric Boerwinkle,Jerome I. Rotter,Matthew A. Allison,Merry-Lynn McDonald,Mina K. Chung,Nicholas L. Smith,Nicholas L. Smith,Nicholas L. Smith,Patrick T. Ellinor,Ramachandran S. Vasan,Rasika A. Mathias,Stephen S. Rich,Susan R. Heckbert,Susan Redline,Xiuqing Guo,Y.-D. Ida Chen,Ching-Ti Liu,Mariza de Andrade,Lisa R. Yanek,Christine M. Albert,Christine M. Albert,Ryan D. Hernandez,Ryan D. Hernandez,Stephen T. McGarvey,Kari E. North,Leslie A. Lange,Bruce S. Weir,Cathy C. Laurie,Jian Yang,Jian Yang,Peter M. Visscher +47 more
TL;DR: The results imply that rare variants, in particular those in regions of low LD, is a major source of the still missing heritability of complex traits and disease.
Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data
Pierrick Wainschtein,Deepti Jain,Zhili Zheng,Stella Aslibekyan,Diane M. Becker,Wenjian Bi,Jennifer A. Brody,Jenna C. Carlson,Adolfo Correa,Margaret Mengmeng Du,Lindsay Fernández-Rhodes,Kendra Ferrier,Misa Graff,Jiang He,Nancy L. Heard-Costa,Heather M. Highland,Joel N. Hirschhorn,Candace M Howard-Claudio,Carmen R. Isasi,Rebecca D. Jackson,Jicai Jiang,Roby Joehanes,Anne E. Justice,Rita R. Kalyani,Sharon L.R. Kardia,Ethan M. Lange,Meryl S. LeBoff,Seunggeun Lee,Xihao Li,Zilin Li,Elise Lim,Danyu Lin,Xihong Lin,Simin Liu,Yingchang Lu,Joanna Manson,Lisa A. Martin,Caitlin P. McHugh,Julie L. Mikulla,Solomon K. Musani,Maggie C.Y. Ng,Deborah A. Nickerson,Nicholette D. Palmer,James C. Perry,Ulrike Peters,Michael Preuss,Qibin Qi,Laura M. Raffield,Laura J. Rasmussen-Torvik,Alexander P. Reiner,Emily M. Russell,Colleen M. Sitlani,Jennifer A. Smith,Cassandra N. Spracklen,Tao Wang,Zhe Wang,Jennifer Wessel,Hanfei Xu,Mohammadi Yaser,Sachiko Yoneyama,Kendra A. Young,Jingwen Zhang,Xinruo Zhang,Hufeng Zhou,Xiaofeng Zhu,Sebastian Zoellner,Namiko Abe,Gonçalo R. Abecasis,François Aguet,Laura Almasy,Álvaro Alonso,Seth A. Ament,Peter Anderson,Pramod Anugu,Deborah Applebaum-Bowden,Kristin G. Ardlie,Dan E. Arking,Allison E. Ashley-Koch,Tim Assimes,Paul L. Auer,Dimitrios Avramopoulos,Najib T. Ayas,Adithya Balasubramanian,John Barnard,Kathleen C. Barnes,Ronald G. Barr,Emily Barron-Casella,Lucas Barwick,Terri H. Beaty,Gerald Beck,Lewis C. Becker,Rebecca L. Beer,Amber L. Beitelshees,Emelia J. Benjamin,Takis Benos,Marcos Bezerra,Lawrence F. Bielak,Joshua Bis,Thomas W. Blackwell,John Blangero,Donald W. Bowden,Russell P. Bowler,Ulrich Broeckel,Jai G. Broome,Deborah L. Brown,Karen L. Bunting,Esteban G. Burchard,Carlos Bustamante,Erin J Buth,Brian E. Cade,Jonathan Cardwell,Vincent J. Carey,Julie Carrier,April P Carson,Cara L. Carty,Richard Casaburi,Juan P. Casas Romero,James M. Casella,Peter J. Castaldi,Mark Chaffin,Christy Y. P. Chang,Yi-Cheng Chang,Sameer Chavan,Bo Chen,Wei-Min Chen,Michael Cho,Seung Hoan Choi,Lee-Ming Chuang,Ren-Hua Chung,C. Clish,Suzy C. Comhair,Matthew P. Conomos,Elaine Cornell,Carolyn J. Crandall,J. Crapo,Joanne E. Curran,Jeffrey R. Curtis,Brian Custer,Coleen M. Damcott,Dawood Darbar,S. David,Colleen P. Davis,Michelle Daya,L. de las Fuentes,Paul S. de Vries,Michael DeBaun,Ranjan Deka,Dawn L. DeMeo,Scott Devine,Huyen Dinh,Harshavardhan Doddapaneni,Qing Duan,Shannon Dugan-Perez,Ravindranath Duggirala,J. Peter Durda,Susan K. Dutcher,Charles B. Eaton,Lynette Ekunwe,A. El Boueiz,Leslie S. Emery,Serpil C. Erzurum,Charles Farber,Jesse Farek,Tasha E. Fingerlin,Matthew Flickinger,Nora Franceschini,Christian D. Frazar,Mao Fu,Stephanie M. Fullerton,Lucinda Fulton,Stacey Gabriel,Weiniu Gan,Shanshan Gao,Yan Gao,Margery Gass,Heather Geiger,Bruce Gelb,M. Geraci,Soren Germer,Robert E. Gerszten,Auyon J. Ghosh,Richard Gibbs,Christopher R. Gignoux,M. Ruban Gladwin,David E. Glahn,Stephanie M. Gogarten,Da-Wei Gong,Harald H.H. Gőring,Sharon L. Graw,Kathryn J. Gray,Daniel Grine,Colin Gross,C. Charles Gu,Yue Guan,Namrata Gupta,David M. Haas,Jeffrey Haessler,Michael N. Hall,Yi Han,Patrick J. Hanly,Daniel N. Harris,Nicola L. Hawley,Benjamin D. Heavner,David M. Herrington,Craig P. Hersh,Bertha Hidalgo,James E. Hixson,Brian D. Hobbs,John Hokanson,Elliot Hong,Karin F. Hoth,Chao A. Hsiung,Jianhong Hu,Yi Jen Hung,Haley Huston,Chii-Min Hwu,Marguerite R. Irvin,Cashell E. Jaquish,Jill M. Johnsen,Andrew Johnson,Craig Johnson,R. Johnston,Kimberly Jones,Hyun Min Kang,Robert Kaplan,Shannon Kelly,Eimear E. Kenny,Michael Kessler,Alyna T. Khan,Ziad Khan,Wonji Kim,John Kimoff,Greg Kinney,Barbara A. Konkle,Holly B. Kramer,Christoph Lange,Jiwon Lee,Sandra L. Lee,Wen-Jane Lee,Jonathon LeFaive,David K. Levine,Daniel Levy,Joshua P. Lewis,Xiaohui Li,Yun Li,Henry J. Lin,Honghuang Lin,Yongmei Liu,Yu Liu,Kathryn L. Lunetta,James Luo,Ulysses J. Magalang,Michael P. Mahaney,Barry J. Make,Ani Manichaikul,Alisa K. Manning,Melissa A. Marton,Susan Mathai,Susanne May,Patrick F. McArdle,Sean K. McFarland,Daniel J. McGoldrick,B. McNeil,Hao Mei,J.R. Meigs,Vipin Menon,Luisa Mestroni,Ginger A. Metcalf,Deborah A. Meyers,Emmanuel Mignot,Nancy Min,Mollie A. Minear,Ryan L. Minster,Matthew Moll,Zeineen Momin,May E. Montasser,Courtney G. Montgomery,Donna M. Muzny,Josyf C. Mychaleckyj,Girish N. Nadkarni,Rakhi Naik,Take Naseri,Pradeep Natarajan,Sergei Nekhai,Sarah C. Nelson,Bonnie Neltner,Caitlin E. Nessner,Osuji Nkechinyere,T. O’Connor,Heather M. Ochs-Balcom,Geoffrey Okwuonu,Allan Pack,David T. Paik,James S. Pankow,George J. Papanicolaou,Cora Parker,Gina M. Peloso,Juan M. Peralta,Marco V Perez,Patricia A. Peyser,L. Phillips,Jacob Pleiness,Toni I. Pollin,Wendy S. Post,Julia Powers Becker,Meher Preethi Boorgula,Pankaj Qasba,Dandi Qiao,Zhaohui S. Qin,Nicholas Rafaels,Mahitha Rajendran,D. C. Rao,Aakrosh Ratan,Robert M. Reed,Catherine Reeves,Muagututi‘a Sefuiva Reupena,Kenneth Rice,Rébecca Robillard,Nicolas Robine,Carolina Roselli,Ingo Ruczinski,Alexi M Runnels,Pamela Russell,Sarah E. Ruuska,Kathleen A. Ryan,Ester Cerdeira Sabino,Danish Saleheen,Shabnam Salimi,Sejal Salvi,Steven L. Salzberg,Kevin Sandow,Vijay G. Sankaran,Jireh Santibanez,Karen Schwander,David A. Schwartz,Frank C. Sciurba,Christine E. Seidman,Jonathan Seidman,Vivien A. Sheehan,S. Sherman,Amol C. Shetty,Aniket Shetty,Wayne H-H Sheu,Brian H. Silver,Edwin K. Silverman,Robert Skomro,Josh Smith,Tanja Smith,Sylvia Smoller,Beverly M. Snively,Michael Snyder,Tamar Sofer,Nona Sotoodehnia,Adrienne M. Stilp,Garrett R. Storm,Elizabeth A. Streeten,Jessica Lasky-Su,Yun Ju Sung,Jody S. Sylvia,Adam A. Szpiro,Daniel Taliun,Hua Tang,Margaret A. Taub,Kent D. Taylor,Matthew D. Taylor,Simeon I. Taylor,M. Telen,Timothy A. Thornton,M. Threlkeld,Lesley F. Tinker,David L. Tirschwell,Sarah A. Tishkoff,Hemant K. Tiwari,Catherine Tong,Russell P. Tracy,Michael Y. Tsai,Dhananjay Vaidya,David Van Den Berg,Peter VandeHaar,Scott I. Vrieze,Tarik Walker,Robert B. Wallace,Avram D. Walts,Fei Fei Wang,Heming Wang,Jiongming Wang,Karol E. Watson,Jennifer Watt,Daniel E. Weeks,Joshua S. Weinstock,Scott T. Weiss,Lu-Chen Weng,Cristen J. Willer,Kayleen Williams,L. Keoki Williams,Carla Wilson,James F. Wilson,Lara Heermans Winterkorn,Quenna Wong,Joseph M. Wu,Huichun Xu,Ivana V. Yang,Ketian Yu,Seyedeh M. Zekavat,Yingze Zhang,Snow Xueyan Zhao,Wei Zhao,Michael C. Zody,L. Adrienne Cupples,Aladdin H. Shadyab,Barbara McKnight,Benjamin Shoemaker,Braxton D. Mitchell,Bruce M. Psaty,Charles Kooperberg,Ching-Ti Liu,Christine M. Albert,Dan M. Roden,Daniel I. Chasman,Donald M. Lloyd-Jones,Donna K. Arnett,Elizabeth A. Regan,Eric Boerwinkle,Jerome I. Rotter,Jeffrey R. O'Connell,Lisa R. Yanek,Mariza de Andrade,Matthew A. Allison,M. McDonald,Mina K. Chung,Myriam Fornage,Nathalie Chami,Nicholas L. Smith,Patrick T. Ellinor,Ramachandran S. Vasan,Rasika A. Mathias,Ruth J. F. Loos,Stephen S. Rich,Steven A. Lubitz,Susan R. Heckbert,Susan Redline,Xiuqing Guo,Y. D. Chen,Cecelia A. Laurie,Ryan D. Hernandez,Stephen T. McGarvey,Michael E. Goddard,Cathy C. Laurie,Kari E. North,Leslie A. Lange,Bruce S. Weir,Loic Yengo,Jian Yang,Peter M. Visscher +453 more
TL;DR: The results imply that rare variants, in particular those in regions of low linkage disequilibrium, are a major source of the still missing heritability of complex traits and disease.
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Rare penetrant mutations confer severe risk of common diseases
Petko Fiziev,Jeremy F. McRae,Jacqueline S. Dron,Tobias Hamp,Yanshen Yang,Pierrick Wainschtein,Zijian Ni,Joshua G. Schraiber,Hong Gao,Dylan M. Cable,Yair Field,François Aguet,Marc Fasnacht,Ahmed M. M. Metwally,Jeffrey Rogers,Tomas Marques-Bonet,Heidi L. Rehm,Anne H. O’Donnell-Luria,Amit Khera,Kyle Kai-How Farh +19 more
TL;DR: In this article , a three-dimensional convolutional neural network for missense variant-effect prediction was used to estimate the pathogenicity of rare coding variants in 454,712 UK Biobank exomes for genes associated with a wide spectrum of complex traits and common diseases.
Predicting expression-altering promoter mutations with deep learning.
Kishore Jaganathan,Nicole Ersaro,Gherman Novakovsky,Yuchuan Wang,Terena James,Jeremy Schwartzentruber,Petko Fiziev,Irfahan Kassam,Fan Cao,Johann Hawe,Henry Cavanagh,Ashley Lim,Grace Png,Jeremy McRae,Abhimanyu Banerjee,Arvind Kumar,JC Ulirsch,Yan Zhang,F. Aguet,Pierrick Wainschtein,Laksshman Sundaram,Adriana Salcedo,Sofia Kyriazopoulou Panagiotopoulou,Delasa Aghamirzaie,Evin Padhi,Ziming Weng,Shan Dong,Damian Smedley,Mark J. Caulfield,Anne H. O’Donnell-Luria,Heidi L. Rehm,Stephan J Sanders,Anshul Kundaje,Stephen B. Montgomery,Mark T Ross,Kyle Kai-How Farh +35 more
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