Richard McKinley
University of Bern
66 Papers
255 Citations
Richard McKinley is an academic researcher from University of Bern. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 18, co-authored 49 publications.
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Papers
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Spyridon Bakas,Mauricio Reyes,Andras Jakab,Stefan Bauer,Markus Rempfler,Alessandro Crimi,Russell T. Shinohara,Christoph Berger,Sung Min Ha,Martin Rozycki,Marcel Prastawa,Esther Alberts,Jana Lipkova,John Freymann,John Freymann,Justin Kirby,Justin Kirby,Michel Bilello,Hassan M. Fathallah-Shaykh,Roland Wiest,Jan S. Kirschke,Benedikt Wiestler,Rivka R. Colen,Aikaterini Kotrotsou,Pamela LaMontagne,Daniel S. Marcus,Mikhail Milchenko,Arash Nazeri,Marc-André Weber,Abhishek Mahajan,Ujjwal Baid,Elizabeth R. Gerstner,Dongjin Kwon,Gagan Acharya,Manu Agarwal,M. S. Alam,Alberto Albiol,Antonio Albiol,F. Albiol,Varghese Alex,Nigel M. Allinson,Pedro H. A. Amorim,Abhijit Amrutkar,Ganesh Anand,Simon Andermatt,Tal Arbel,Pablo Arbeláez,Aaron Avery,Muneeza Azmat,B. Pranjal,Wenjia Bai,Subhashis Banerjee,Subhashis Banerjee,Bill Barth,Thomas Batchelder,Kayhan Batmanghelich,Enzo Battistella,Enzo Battistella,Andrew Beers,Mikhail Belyaev,Martin Bendszus,Eze Benson,Jose Bernal,H. N. Bharath,George Biros,Sotirios Bisdas,James M. Brown,Mariano Cabezas,Shilei Cao,Jorge Cardoso,Eric Carver,Adrià Casamitjana,Laura Silvana Castillo,Marcel Catà,Philippe C. Cattin,Albert Cerigues,Vinicius S. Chagas,Siddhartha Chandra,Yi-Ju Chang,Shiyu Chang,Ken Chang,Joseph Chazalon,Shengcong Chen,Wei Chen,Jefferson W. Chen,Zhaolin Chen,Kun Cheng,Ahana Roy Choudhury,Roger Chylla,Albert Clèrigues,Steven Colleman,Ramiro German Rodriguez Colmeiro,Ramiro German Rodriguez Colmeiro,Marc Combalia,Anthony Costa,Xiaomeng Cui,Zhenzhen Dai,Lutao Dai,Laura Alexandra Daza,Eric Deutsch,Changxing Ding,Chao Dong,Shidu Dong,Wojciech Dudzik,Zach Eaton-Rosen,Gary F. Egan,Guilherme Escudero,Théo Estienne,Théo Estienne,Richard M. Everson,Jonathan Fabrizio,Yong Fan,Longwei Fang,Xue Feng,Enzo Ferrante,Lucas Fidon,Martin H. Fischer,Andrew P. French,Naomi Fridman,Huan Fu,David Fuentes,Yaozong Gao,Evan Gates,David T. Gering,Amir Gholami,Willi Gierke,Ben Glocker,Mingming Gong,Mingming Gong,Sandra González-Villà,Thomas Grosges,Yuanfang Guan,Sheng Guo,Sudeep Gupta,Woo-Sup Han,Il Song Han,Konstantin Harmuth,Huiguang He,Aura Hernández-Sabaté,Evelyn Herrmann,Naveen Himthani,Winston H. Hsu,Cheyu Hsu,Hu Xiaojun,Xiaobin Hu,Yan Hu,Yifan Hu,Rui Hua,Teng-Yi Huang,Weilin Huang,Sabine Van Huffel,Quan Huo,Vivek Hv,Khan M. Iftekharuddin,Fabian Isensee,Mobarakol Islam,Aaron S. Jackson,Sachin Jambawalikar,Andrew Jesson,Weijian Jian,Peter H. Jin,V Jeya Maria Jose,V Jeya Maria Jose,Alain Jungo,Bernhard Kainz,Konstantinos Kamnitsas,Po-Yu Kao,Ayush Karnawat,Thomas Kellermeier,Adel Kermi,Kurt Keutzer,Mohamed Tarek Khadir,Mahendra Khened,Philipp Kickingereder,Geena Kim,Nik King,Haley Knapp,Urspeter Knecht,Lisa Kohli,Deren Kong,Xiangmao Kong,Simon Koppers,Avinash Kori,Ganapathy Krishnamurthi,Egor Krivov,Piyush Kumar,Kaisar Kushibar,Dmitrii Lachinov,Dmitrii Lachinov,Tryphon Lambrou,Joon Lee,Chengen Lee,Yuehchou Lee,Matthew C. H. Lee,Szidónia Lefkovits,László Lefkovits,James Levitt,Tengfei Li,Hongwei Li,Wenqi Li,Wenqi Li,Hongyang Li,Xiaochuan Li,Yuexiang Li,Heng Li,Zhenye Li,Xiaoyu Li,Zeju Li,XiaoGang Li,Zheng-Shen Lin,Fengming Lin,Pietro Liò,C Liu,Boqiang Liu,Xiang Liu,Mingyuan Liu,Ju Liu,Luyan Liu,Xavier Lladó,Marc Moreno Lopez,Pablo Ribalta Lorenzo,Zhentai Lu,Lin Luo,Zhigang Luo,Jun Ma,Kai Ma,Thomas Mackie,Anant Madabushi,Issam Mahmoudi,Klaus H. Maier-Hein,Pradipta Maji,C. P. Mammen,Andreas Mang,B.S. Manjunath,M. Marcinkiewicz,Steven McDonagh,Stephen J. McKenna,Richard McKinley,Miriam Mehl,Sachin Mehta,Raghav Mehta,Raphael Meier,Christoph Meinel,Dorit Merhof,Craig H. Meyer,Robert F. Miller,Sushmita Mitra,Aliasgar Moiyadi,David Molina-García,Miguel Monteiro,Grzegorz Mrukwa,Andriy Myronenko,Jakub Nalepa,Thuyen Ngo,Dong Nie,Holly Ning,Chen Niu,Nicholas Nuechterlein,Eric K. Oermann,Arlindo L. Oliveira,Arlindo L. Oliveira,Diego D. C. Oliveira,Arnau Oliver,Alexander F. I. Osman,Yu-Nian Ou,Sebastien Ourselin,Nikos Paragios,Moo Sung Park,Brad Paschke,J. Gregory Pauloski,Kamlesh Pawar,Nick Pawlowski,Linmin Pei,Suting Peng,Silvio M. Pereira,Julián Pérez-Beteta,Víctor M. Pérez-García,Simon Pezold,Bao Pham,Ashish Phophalia,Gemma Piella,G. N. Pillai,Marie Piraud,Maxim Pisov,Anmol Popli,Michael P. Pound,Reza Pourreza,Prateek Prasanna,Vesna Prkovska,Tony P. Pridmore,Santi Puch,Elodie Puybareau,Buyue Qian,Xu Qiao,Martin Rajchl,Swapnil Rane,Michael Rebsamen,Hongliang Ren,Xuhua Ren,Karthik Revanuru,Mina Rezaei,Oliver Rippel,Luis Carlos Rivera,Charlotte Robert,Bruce R. Rosen,Daniel Rueckert,Mohammed Safwan,Mostafa Salem,Joaquim Salvi,Irina Sánchez,Heitor M. Santos,Emmett Sartor,Dawid Schellingerhout,Klaudius Scheufele,Matthew R. Scott,Artur A. Scussel,Sara Sedlar,Juan Pablo Serrano-Rubio,N. Jon Shah,Nameetha Shah,Mazhar Shaikh,B. Uma Shankar,Zeina A. Shboul,Haipeng Shen,Dinggang Shen,Linlin Shen,Haocheng Shen,Varun Shenoy,Feng Shi,Hyung Eun Shin,Hai Shu,Diana M. Sima,Matthew Sinclair,Örjan Smedby,James Snyder,Mohammadreza Soltaninejad,Guidong Song,Mehul Soni,Jean Stawiaski,Shashank Subramanian,Li Sun,Roger Sun,Roger Sun,Jiawei Sun,Kay Sun,Yu Sun,Guoxia Sun,Shuang Sun,Yannick Suter,László Szilágyi,Sanjay N. Talbar,Dacheng Tao,Zhongzhao Teng,Siddhesh Thakur,Meenakshi Thakur,Sameer Tharakan,Pallavi Tiwari,Guillaume Tochon,Tuan Tran,Yuhsiang M. Tsai,Kuan-Lun Tseng,Tran Anh Tuan,Vadim Turlapov,Nicholas J. Tustison,Maria Vakalopoulou,Sergi Valverde,Rami Vanguri,Evgeny Vasiliev,Jonathan Ventura,Luis Vera,Tom Vercauteren,Tom Vercauteren,C. A. Verrastro,Lasitha Vidyaratne,Verónica Vilaplana,Ajeet Vivekanandan,Guotai Wang,Guotai Wang,Qian Wang,Chiatse J. Wang,Weichung Wang,Duo Wang,Ruixuan Wang,Yuanyuan Wang,Chunliang Wang,Ning Wen,Xin Wen,Leon Weninger,Wolfgang Wick,Shaocheng Wu,Qiang Wu,Yihong Wu,Yong Xia,Yanwu Xu,Xiaowen Xu,Peiyuan Xu,Tsai-Ling Yang,Xiaoping Yang,Hao-Yu Yang,Junlin Yang,Haojin Yang,Guang Yang,Hongdou Yao,Xujiong Ye,Changchang Yin,Brett Young-Moxon,Jinhua Yu,Xiangyu Yue,Songtao Zhang,Angela Zhang,Kun Zhang,Xuejie Zhang,Lichi Zhang,Xiaoyue Zhang,Yazhuo Zhang,Lei Zhang,Jianguo Zhang,Xiang Zhang,Tianhao Zhang,Sicheng Zhao,Yu Zhao,Xiaomei Zhao,Liang Zhao,Liang Zhao,Yefeng Zheng,Liming Zhong,Chenhong Zhou,Xiaobing Zhou,Fan Zhou,Hongtu Zhu,Jin Zhu,Ying Zhuge,Weiwei Zong,Jayashree Kalpathy-Cramer,Keyvan Farahani,Christos Davatzikos,Koen Van Leemput,Koen Van Leemput,Bjoern H. Menze +438 more
TL;DR: This study assesses the state-of-the-art machine learning methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018, and investigates the challenge of identifying the best ML algorithms for each of these tasks.
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ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI
Oskar Maier,Bjoern H. Menze,Janina von der Gablentz,Levin Häni,Mattias P. Heinrich,Matthias Liebrand,Stefan Winzeck,Abdul Basit,Paul Bentley,Liang Chen,Daan Christiaens,Francis Dutil,Karl Egger,Chaolu Feng,Ben Glocker,Michael Götz,Tom Haeck,Hanna-Leena Halme,Hanna-Leena Halme,Mohammad Havaei,Khan M. Iftekharuddin,Pierre-Marc Jodoin,Konstantinos Kamnitsas,Elias Kellner,Antti Korvenoja,Hugo Larochelle,Christian Ledig,Jia-Hong Lee,Frederik Maes,Qaiser Mahmood,Qaiser Mahmood,Klaus H. Maier-Hein,Richard McKinley,John Muschelli,Chris Pal,Linmin Pei,Janaki Raman Rangarajan,Syed M. S. Reza,David Robben,Daniel Rueckert,Eero Salli,Paul Suetens,Ching-Wei Wang,Matthias Wilms,Jan S. Kirschke,Ulrike M. Krämer,Thomas F. Münte,Peter Schramm,Roland Wiest,Heinz Handels,Mauricio Reyes +50 more
TL;DR: This paper proposes a common evaluation framework for automatic stroke lesion segmentation from MRIP, describes the publicly available datasets, and presents the results of the two sub‐challenges: Sub‐Acute Stroke Lesion Segmentation (SISS) and Stroke Perfusion Estimation (SPES).
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Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge
Hugo J. Kuijf,Adrià Casamitjana,D. Louis Collins,Mahsa Dadar,Achilleas Georgiou,Mohsen Ghafoorian,Dakai Jin,April Khademi,Jesse Knight,Hongwei Li,Xavier Lladó,J. Matthijs Biesbroek,Miguel Luna,Qaiser Mahmood,Richard McKinley,Alireza Mehrtash,Sebastien Ourselin,Bo-yong Park,Hyunjin Park,Sang-Hyun Park,Simon Pezold,Elodie Puybareau,Jeroen de Bresser,Leticia Rittner,Carole H. Sudre,Sergi Valverde,Verónica Vilaplana,Roland Wiest,Yongchao Xu,Ziyue Xu,Guodong Zeng,Jianguo Zhang,Guoyan Zheng,Rutger Heinen,Christopher Chen,Wiesje M. van der Flier,Frederik Barkhof,Max A. Viergever,Geert Jan Biessels,Simon Andermatt,Mariana P. Bento,Matt Berseth,Mikhail Belyaev,M. Jorge Cardoso +43 more
TL;DR: There is a cluster of four methods that rank significantly better than the other methods, with one clear winner, and the inter-scanner robustness ranking shows that not all the methods generalize to unseen scanners.
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Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure
Olivier Commowick,Audrey Istace,Michael Kain,Baptiste Laurent,Florent Leray,Mathieu Simon,Sorina Camarasu-Pop,Pascal Girard,Roxana Ameli,Jean-Christophe Ferré,Anne Kerbrat,Thomas Tourdias,Frederic Cervenansky,Tristan Glatard,Jeremy Beaumont,Senan Doyle,Florence Forbes,Jesse Knight,April Khademi,Amirreza Mahbod,Chunliang Wang,Richard McKinley,Franca Wagner,John Muschelli,Elizabeth M. Sweeney,Eloy Roura,Xavier Lladó,Michel M. dos Santos,Wellington Pinheiro dos Santos,Abel G. Silva-Filho,Xavier Tomas-Fernandez,Hélène Urien,Isabelle Bloch,Sergi Valverde,Mariano Cabezas,Francisco Javier Vera-Olmos,Norberto Malpica,Charles R.G. Guttmann,Sandra Vukusic,Gilles Edan,Michel Dojat,Martin Styner,Simon K. Warfield,François Cotton,Christian Barillot +44 more
TL;DR: Results of the challenge highlighted that automatic algorithms, including the recent machine learning methods, are still trailing human expertise on both detection and delineation criteria, and it is demonstrated that computing a statistically robust consensus of the algorithms performs closer tohuman expertise on one score (segmentation) although still trailing on detection scores.
Federated learning enables big data for rare cancer boundary detection
Sarthak Pati,Ujjwal Baid,Brandon Edwards,Micah J. Sheller,Shih-han Wang,G. Anthony Reina,Patrick Foley,Alexey Gruzdev,Deepthi Karkada,Christos Davatzikos,Chiharu Sako,Satyam Ghodasara,Michel Bilello,Suyash Mohan,Philipp Vollmuth,Gianluca Brugnara,Chandrakanth Jayachandran Preetha,Felix Sahm,Klaus H. Maier-Hein,Maximilian Zenk,Martin Bendszus,Wolfgang Wick,R. Calabrese,Jeffrey D. Rudie,Javier Villanueva-Meyer,So Yeon Cha,Madhura Ingalhalikar,Manali Jadhav,Umang Pandey,Jitender Saini,John Garrett,Matthew H. Larson,Robert Jeraj,Stuart Currie,R. Frood,Kavi Fatania,Raymond Y. Huang,Ken Chang,Carmen Balaña Quintero,Jaume Capellades,Josep Puig,Johannes Trenkler,Josef Pichler,Georg Necker,Andreas Haunschmidt,Stephan Meckel,Gaurav Shukla,Spencer Liem,Gregory S. Alexander,Joseph Lombardo,Joshua D. Palmer,Adam E. Flanders,Adam P. Dicker,Haris I. Sair,Craig K. Jones,Archana Venkataraman,Meirui Jiang,Tiffany Y. So,Cheng Chen,Pheng-Ann Heng,Qi Dou,Michal Kozubek,Filip Lux,Jan Mich'alek,Petr Matula,Milovs Kevrkovsk'y,Tereza Kopvrivov'a,Marek Dost'al,V'aclav Vyb'ihal,Michael A. Vogelbaum,James R. Mitchell,Joaquim M. Farinhas,Joseph A. Maldjian,Chandan Ganesh Bangalore Yogananda,Marco Da Cunha Pinho,Divya Reddy,James M. Holcomb,Benjamin C. Wagner,Benjamin M. Ellingson,Timothy F. Cloughesy,Catalina Raymond,Talia Oughourlian,Akifumi Hagiwara,Chencai Wang,Minh-Son To,Sargam Bhardwaj,Chee Chong,Marc Agzarian,Alexandre X. Falcão,Samuel Botter Martins,Bernardo Teixeira,Flávia Sprenger,David Menotti,Diego R. Lucio,Pamela LaMontagne,Daniel S. Marcus,Benedikt Wiestler,Florian Kofler,Ivan Ezhov,Marie-Christin Metz,Rajan B. Jain,Matthew C. H. Lee,Yvonne W. Lui,Richard McKinley,Johannes Slotboom,Piotr Radojewski,Raphael Meier,Roland Wiest,Derrick Murcia,Eric Fu,Rourke Haas,Johnna Kellie Fox Thompson,D. Ryan Ormond,Chaitra Badve,Andrew E. Sloan,Vachan Vadmal,Kristin Waite,Rivka R. Colen,Linmin Pei,Murat Ak,Ashok Srinivasan,J. Rajiv Bapuraj,Arvind Rao,Nicholas C. Wang,Ota Yoshiaki,Toshio Moritani,Sevcan Turk,Joonsang Lee,Snehal Prabhudesai,Fanny Mor'on,Jacob Mandel,Konstantinos Kamnitsas,Ben Glocker,Luke Dixon,Matthew Williams,Peter Zampakis,V. Panagiotopoulos,Panagiotis Tsiganos,Sotiris Alexiou,Ilias Haliassos,Evangelia I. Zacharaki,Konstantinos Moustakas,Christina Kalogeropoulou,Dimitrios Kardamakis,Yoon Seong Choi,Seung Koo Lee,Jong Hee Chang,Sung Soo Ahn,Bing Luo,Laila M. Poisson,N. Wen,Pallavi Tiwari,Ruchika Verma,Rohan Bareja,I. Yadav,Jonathan Chen,Neeraj Kumar,Marion Smits,Sebastian R. van der Voort,Ahmed Alafandi,Fatih Incekara,Maarten M. J. Wijnenga,Georgios Kapas,Renske Gahrmann,Joost Schouten,Hendrikus J. Dubbink,Arnaud J P E Vincent,Martin J. van den Bent,Pim J. French,Stefan Klein,Yading Yuan,Sonam Sharma,Tzu Chi Tseng,Saba Adabi,Simone P. Niclou,Olivier Keunen,Annika Hau,Martin Vallières,David Fortin,Martin Lepage,Bennett A. Landman,Karthik Ramadass,Kaiwen Xu,Silky Chotai,Lola B. Chambless,Akshitkumar M. Mistry,Reid C. Thompson,Yuriy Gusev,Krithika Bhuvaneshwar,Anousheh Sayah,Camelia Bencheqroun,Anas Belouali,Subhashree Madhavan,Thomas C. Booth,Alysha Chelliah,Marc Modat,H. Shuaib,Carmen Dragos,Aly Abayazeed,Kenneth E. Kolodziej,Michael Hill,A. Abbassy,Shady Mohamed Tarek Gamal,Mahmoud Mekhaimar,Mohamed Qayati,Mauricio Reyes,Ji Eun Park,Jihye Yun,Ho Sung Kim,Abhishek Mahajan,Mark Muzi,Sean Benson,Regina G. H. Beets-Tan,Jonas Teuwen,A. Herrera-Trujillo,Maria Trujillo,W. Escobar,Ana Lorena Abello,Jose Bernal,Jhonny C. G'omez,Joseph Choi,Stephen Baek,Yusung Kim,H. Ismael,Bryan G. Allen,John M. Buatti,Aikaterini Kotrotsou,Hongwei Li,Tobias Weiss,Michael Weller,Andrea Bink,B. Pouymayou,Hassan Fathallah Shaykh,Joel H. Saltz,Prateek Prasanna,Sampurna Shrestha,K.M. Mani,David Payne,T. Kurca,Enrique Pelaez,Heydy Franco-Maldonado,Francis R. Loayza,Sebastian Quevedo,Pamela Guevara,Esteban Torche,Cristóbal Mendoza,Franco Vera,Elvis R'ios,E. L'opez,Sergio A. Velastin,Godwin Ogbole,Dotun Oyekunle,O.O Odafe-Oyibotha,Babatunde Ebenezer Osobu,Mustapha Shu’aibu,Adeleye Dorcas,Mayowa Abimbola Soneye,Farouk Dako,Amber L. Simpson,Mohammad Hamghalam,Jacob J. Peoples,Ricky Hu,Anh Tran,D A Cutler,Fabio Y. Moraes,Michael A. Boss,James F. Gimpel,Deepak Kattil Veettil,Kendall Schmidt,Brian Bialecki,S. Marella,Cynthia O. Price,Lisa Cimino,Charles Apgar,Prashant Shah,Bjoern H. Menze,Jill S. Barnholtz-Sloan,Jason Martin,Spyridon Bakas +278 more
TL;DR: This paper presented the largest FL study to date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature.