Moriel Singer-Berk
Broad Institute
29 Papers
3 Citations
Moriel Singer-Berk is an academic researcher from Broad Institute. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 4, co-authored 7 publications.
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Papers
The mutational constraint spectrum quantified from variation in 141,456 humans
Konrad J. Karczewski,Laurent C. Francioli,Grace Tiao,Beryl B. Cummings,Jessica Alföldi,Qingbo Wang,Ryan L. Collins,Kristen M. Laricchia,Andrea Ganna,Daniel P. Birnbaum,Laura D. Gauthier,Harrison Brand,Matthew Solomonson,Nicholas A. Watts,Daniel R. Rhodes,Moriel Singer-Berk,Eleina M. England,Eleanor G. Seaby,Jack A. Kosmicki,Raymond K. Walters,Katherine Tashman,Yossi Farjoun,Eric Banks,Timothy Poterba,Arcturus Wang,Cotton Seed,Nicola Whiffin,Jessica X. Chong,Kaitlin E. Samocha,Emma Pierce-Hoffman,Zachary Zappala,Anne H. O’Donnell-Luria,Eric Vallabh Minikel,Ben Weisburd,Monkol Lek,James S. Ware,Christopher Vittal,Irina M. Armean,Louis Bergelson,Kristian Cibulskis,Kristen M. Connolly,Miguel Covarrubias,Stacey Donnelly,Steven Ferriera,Stacey Gabriel,Jeff Gentry,Namrata Gupta,Thibault Jeandet,Diane Kaplan,Christopher Llanwarne,Ruchi Munshi,Sam Novod,Nikelle Petrillo,David Roazen,Valentin Ruano-Rubio,Andrea Saltzman,Molly Schleicher,Jose Soto,Kathleen Tibbetts,Charlotte Tolonen,Gordon Wade,Michael E. Talkowski,Benjamin M. Neale,Mark J. Daly,Daniel G. MacArthur +64 more
TL;DR: A catalogue of predicted loss-of-function variants in 125,748 whole-exome and 15,708 whole-genome sequencing datasets from the Genome Aggregation Database (gnomAD) reveals the spectrum of mutational constraints that affect these human protein-coding genes.
Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes
Konrad J. Karczewski,Konrad J. Karczewski,Laurent C. Francioli,Laurent C. Francioli,Grace Tiao,Grace Tiao,Beryl B. Cummings,Beryl B. Cummings,Jessica Alföldi,Jessica Alföldi,Qingbo Wang,Qingbo Wang,Ryan L. Collins,Ryan L. Collins,Kristen M. Laricchia,Kristen M. Laricchia,Andrea Ganna,Andrea Ganna,Andrea Ganna,Daniel P. Birnbaum,Laura D. Gauthier,Harrison Brand,Harrison Brand,Matthew Solomonson,Matthew Solomonson,Nicholas A. Watts,Nicholas A. Watts,Daniel R. Rhodes,Moriel Singer-Berk,Eleanor G. Seaby,Eleanor G. Seaby,Jack A. Kosmicki,Jack A. Kosmicki,Raymond K. Walters,Raymond K. Walters,Katherine Tashman,Katherine Tashman,Yossi Farjoun,Eric Banks,Timothy Poterba,Timothy Poterba,Arcturus Wang,Arcturus Wang,Cotton Seed,Cotton Seed,Nicola Whiffin,Nicola Whiffin,Jessica X. Chong,Kaitlin E. Samocha,Emma Pierce-Hoffman,Zachary Zappala,Zachary Zappala,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Eric Vallabh Minikel,Ben Weisburd,Monkol Lek,Monkol Lek,James S. Ware,James S. Ware,Christopher Vittal,Christopher Vittal,Irina M. Armean,Irina M. Armean,Irina M. Armean,Louis Bergelson,Kristian Cibulskis,Kristen M. Connolly,Miguel Covarrubias,Stacey Donnelly,Steven Ferriera,Stacey Gabriel,Jeff Gentry,Namrata Gupta,Thibault Jeandet,Diane Kaplan,Christopher Llanwarne,Ruchi Munshi,Sam Novod,Nikelle Petrillo,David Roazen,Valentin Ruano-Rubio,Andrea Saltzman,Molly Schleicher,Jose Soto,Kathleen Tibbetts,Charlotte Tolonen,Gordon Wade,Michael E. Talkowski,Michael E. Talkowski,Benjamin M. Neale,Benjamin M. Neale,Mark J. Daly,Daniel G. MacArthur,Daniel G. MacArthur +95 more
TL;DR: Using an improved human mutation rate model, human protein-coding genes are classified along a spectrum representing tolerance to inactivation, validate this classification using data from model organisms and engineered human cells, and show that it can be used to improve gene discovery power for both common and rare diseases.
Variant interpretation using population databases: lessons from gnomAD
Sanna Gudmundsson,Moriel Singer-Berk,Nicholas A. Watts,William Phu,Julia K. Goodrich,Matthew Solomonson,Heidi L. Rehm,Daniel G. MacArthur,Anne H. O’Donnell-Luria +8 more
TL;DR: The Genome Aggregation Database (gnomAD) as discussed by the authors is the largest and most widely used publicly available collection of population variation from harmonized sequencing data, which is available through the online gnomAD browser (https://gnomad.broadinstitute.org/) that enables rapid and intuitive variant analysis.
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Transcript expression-aware annotation improves rare variant interpretation
Beryl B. Cummings,Beryl B. Cummings,Konrad J. Karczewski,Konrad J. Karczewski,Jack A. Kosmicki,Jack A. Kosmicki,Eleanor G. Seaby,Eleanor G. Seaby,Nicholas A. Watts,Nicholas A. Watts,Moriel Singer-Berk,Jonathan M. Mudge,Juha Karjalainen,Juha Karjalainen,F. Kyle Satterstrom,F. Kyle Satterstrom,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Timothy Poterba,Timothy Poterba,Cotton Seed,Cotton Seed,Matthew Solomonson,Matthew Solomonson,Jessica Alföldi,Jessica Alföldi,Genome Aggregation Database Production Team,Genome Aggregation Database Production Team,Mark J. Daly,Mark J. Daly,Daniel G. MacArthur +31 more
TL;DR: A novel variant annotation metric that quantifies the level of expression of genetic variants across tissues is validated in the Genome Aggregation Database (gnomAD) and is shown to improve rare variant interpretation.
The landscape of tolerated genetic variation in humans and primates
Hong Gao,Tobias Hamp,Joshua G. Schraiber,Jeremy F. McRae,Moriel Singer-Berk,Yanshen Yang,Petko Fiziev,Lukas F. K. Kuderna,Laksshman Sundaram,Aashish N. Adhikari,Yair Field,Serafim Batzoglou,François Aguet,Gabrielle Lemire,Rebecca M. Reimers,Daniel J. Balick,Mareike C. Janiak,Martin Kuhlwilm,Joseph D. Orkin,Shivakumara Manu,A. Valenzuela,Juraj Bergman,Felipe Ennes Silva,Lidia Agueda,Julie Blanc,Marta Gut,Dorien de Vries,Ian Goodhead,R. Alan Harris,Muthuswamy Raveendran,Idrissa S. Chuma,Julie E. Horvath,Christina Hvilsom,David Juan,Peter Frandsen,Fabiano Rodrigues de Melo,Fabrício Bertuol,Hazel Byrne,Iracilda Sampaio,Izeni Pires Farias,João Valsecchi do Amaral,Mariluce Rezende Messias,Mihir Trivedi,Rogério Vieira Rossi,Tomáš Herben,Nicole V. Andriaholinirina,C. Rabarivola,Alphonse Zaramody,Clifford J. Jolly,Jane E. Phillips-Conroy,Gregory K. Wilkerson,Christian R. Abee,J. L. Simmons,Eduardo Fernandez-Duque,Fekadu Shiferaw,Dongdong Wu,Long Zhou,Yong Shao,Guojie Zhang,Julius Keyyu,Sascha Knauf,Minh Duc Le,Esther Lizano,Stefan Merker,Arcadi Navarro,Tilo Nadler,Chiea Chuen Khor,Jessica G. H. Lee,Patrick Tan,Weng Khong Lim,Andrew C. Kitchener,Dietmar Zinner,Ivo Gut,Amanda D. Melin,Katerina Guschanski,Mikkel H. Schierup,Robin M. D. Beck,Govindaswamy Umapathy,Christian Roos,Jean P. Boubli,Monkol Lek,Shamil R. Sunyaev,Anne O’Donnell,Heidi L. Rehm,Jinbo Xu,Jeffrey Rogers,Tomas Marques-Bonet,Kyle Kai-How Farh +87 more
TL;DR: In this paper , a deep learning classifier was trained on 4.3 million common primate missense variants with orthologs in human to diagnose pathogenic variants in patients with genetic diseases.