TL;DR: Sequences of 18 single‐copy, anonymous nuclear loci from the Malagasy plated lizard Zonosaurus madagascariensis revealed a high frequency of single nucleotide polymorphisms, supporting previous reports of high levels of intraspecific variation in lizards.
Abstract: We report the development of 18, single-copy, anonymous nuclear loci from the Malagasy plated lizard Zonosaurus madagascariensis. More than 140 clones from a genomic library were examined and 38 potential loci tested across both closely and distantly related lizards. Of the 18 loci reported here, more than half (10) work in closely related zonosaurines although only one successfully amplified a homologous fragment in the distantly related iguanid (Oplurus). Sequences of these loci revealed a high frequency of single nucleotide polymorphisms, supporting previous reports of high levels of intraspecific variation in lizards.
TL;DR: A molecular phylogeny based on >2kb of both mitochondrial and nuclear DNA sequences indicates Zonosaurinae are monophyletic, arising from a single colonization event, likely from Africa to Madagascar in the Paleogene (Paleocene/early Eocene), with subsequent radiation.
TL;DR: A comprehensive analytical approach is utilized to examine evolutionary drivers and elucidate the biogeographic history of Malagasy plated lizards (Zonosaurinae) to highlight the power of combining multilocus phylogenetic and spatially explicit analyses for testing alternative diversification hypotheses within Madagascar's unique biota and more generally.
Abstract: Although numerous studies have attempted to find single unifying mechanisms for generating Madagascar's unique flora and fauna, little consensus has been reached regarding the relative importance of climatic, geologic and ecological processes as catalysts of diversification of the region's unique biota. Rather, recent work has shown that both biological and physical drivers of diversification are best analysed in a case-by-case setting with attention focused on the ecological and life-history requirements of the specific phylogenetic lineage under investigation. Here, we utilize a comprehensive analytical approach to examine evolutionary drivers and elucidate the biogeographic history of Malagasy plated lizards (Zonosaurinae). Data from three genes are combined with fossil information to construct time-calibrated species trees for zonosaurines and their African relatives, which are used to test alternative diversification hypotheses. Methods are utilized for explicitly incorporating phylogenetic uncertainty into downstream analyses. Species distribution models are created for 14 of 19 currently recognized species, which are then used to estimate spatial patterns of species richness and endemicity. Spatially explicit analyses are employed to correlate patterns of diversity with both topographic heterogeneity and climatic stability through geologic time. We then use inferred geographic ranges to estimate the biogeographic history of zonosaurines within each of Madagascar's major biomes. Results suggest constant Neogene and Quaternary speciation with divergence from the African most recent common ancestor ~30 million years ago when oceanic currents and African rivers facilitated dispersal. Spatial patterns of diversity appear concentrated along coastal regions of northern and southern Madagascar. We find no relationship between either topographic heterogeneity or climatic stability and patterns of diversity. Ancestral state reconstructions suggest that western dry forests were important centres of origin with recent invasion into spiny and rain forest. These data highlight the power of combining multilocus phylogenetic and spatially explicit analyses for testing alternative diversification hypotheses within Madagascar's unique biota and more generally, particularly as applied to phylogenetically and biologically constrained systems.
TL;DR: The phylogenetic position of the genus Tracheloptychus remains uncertain: whereas in the species tree it was recovered as the sister group to Zonosaurs, other methods indicated that it was nested within Zonosaurus, albeit alternative topologies were rejected with only marginal statistical support.
TL;DR: The results lead the Tuatara to be considered as a few evoluted Lepidosaur (according to its brain organization); comparisons with lizards bring it close to the Lacertomorpha (Type I Lizards), considered by Northcutt (1972) as less advanced saurens than the Dracomorphas (Type II Lizards).
Abstract: This study has been carried out on two adults of the species Sphenodon punctatus (Sphenodontidae). The results allowed us to establish the numerical features of the brain organization in this species. Comparisons were done with regard to a sample of forty various species of lizards, in which six species of Lacertids were taken as a mean reference level (Platel, 1975). Opposite to those of the Lacertids (100), the index of encephalization in Tuatara has a low value (70.2), but locates Sphenodon in the neighbourhood of lizards of the family Cordylidae (Cordylus, Zonosaurus). This feature remains the same for the main subdivisions of the brain, according to the value of their structure index (as well as their isoponderal percentage). In most subdivisions, the indices show also low values, except for Epithalamus (359), dorsal thalamus (118) and cerebellum (121); some hypothesis were given according to olfaction, vision and locomotion in Tuatara. On the whole, our results lead us to consider the Tuatara as a few evoluted Lepidosaur (according to its brain organization); comparisons with lizards bring it close to the Lacertomorpha (Type I Lizards), considered by Northcutt (1972) as less advanced saurens than the Dracomorpha (Type II Lizards).