TL;DR: The complete mitochondrial DNA (mtDNA) of the wallaroo was sequenced and rejected significantly the commonly acknowledged Theria hypothesis, according to which Marsupialia and Eutheria are grouped together to the exclusion of Monotremata.
Abstract: The complete mitochondrial DNA (mtDNA) (16,896 nt) of the wallaroo (Macropus robustus) was sequenced. The concatenated amino acid sequences of 12 mitochondrial protein-coding genes of the wallaroo plus those of a number of other mammals were included in a phylogenetic study of early mammalian divergences. The analysis joined monotremes and marsupials (the Marsupionta hypothesis) to the exclusion of eutherians. The analysis rejected significantly the commonly acknowledged Theria hypothesis, according to which Marsupialia and Eutheria are grouped together to the exclusion of Monotremata. The region harboring the gene for lysine tRNA (tRNA-Lys) in the mtDNA of other vertebrates is in the wallaroo occupied by a sequence (tRNA-Lys) that lacks both an anticodon loop as well as the anticodon for the amino acid lysine. An alternative tRNA-Lys gene was not identified in any other region of the mtDNA of the wallaroo, suggesting that a tRNA-Lys of nuclear origin is imported into marsupial mitochondria. Previously described RNA editing of tRNA-Asp and rearrangement of some tRNA genes were reconfirmed in the mtDNA of the wallaroo. The divergence between Monotremata/Marsupialia and Eutheria was timed to ≈130 million years before present (MYBP). The same calculations suggested that Monotremata and Marsupialia diverged ≈115 MYBP and that Australian and American marsupials separated ≈75 MYBP. The findings also show that many, probably most, extant eutherian orders had their origin in middle to late Cretaceous times, 115–65 MYBP.
TL;DR: This study highlights the need for further investigation into the genetic diversity of Blastocystis which could help show the zoonotic potential of Blastocrystis.
TL;DR: In this article, the authors analysed mitochondrial genome sequences of a bandicoot (Isoodon macrourus) and a brushtail possum (Trichosurus vulpecula) together with the previously available marsupial mitochondrial genomes, the Virginia opossum (Didelphis virginiana) and the wallaroo (Macropus robustus).
Abstract: Recent molecular analyses suggest that the position of bandicoots is the major difficulty in determining the root of the tree of extant marsupials. To resolve this, we analyse mitochondrial genome sequences of a bandicoot (Isoodon macrourus) and a brushtail possum (Trichosurus vulpecula) together with the previously available marsupial mitochondrial genomes, the Virginia opossum (Didelphis virginiana) and the wallaroo (Macropus robustus). Analyses of mitochondrial protein-coding and RNA genes strongly support the bandicoot as sister to the wallaroo and the brushtail possum. This result, combined with other recent molecular analyses, confirms the monophyly of Australidelphia (Australasian marsupials plus Dromiciops from South America). Further, RY coding was found to nullify AGCT coding nucleotide composition bias.
TL;DR: This study demonstrates that where census and habitat data are available, it is possible to reveal species' interactions (and measure their relative strength and direction) between large, mobile and/or widely-distributed species for which competition is difficult to demonstrate experimentally, and should improve the predictive power of species distribution models.
Abstract: 1 Much recent research has focused on the use of species distribution models to explore the influence(s) of environment (predominantly climate) on species' distributions A weakness of this approach is that it typically does not consider effects of biotic interactions, including competition, on species' distributions 2 Here we identify and quantify the contribution of environmental factors relative to biotic factors (interspecific competition) to the distribution and abundance of three large, wide-ranging herbivores, the antilopine wallaroo (Macropus antilopinus), common wallaroo (Macropus robustus) and eastern grey kangaroo (Macropus giganteus), across an extensive zone of sympatry in tropical northern Australia 3 To assess the importance of competition relative to habitat features, we constructed models of abundance for each species incorporating habitat only and habitat + the abundance of the other species, and compared their respective likelihoods using Akaike's information criterion We further assessed the importance of variables predicting abundance across models for each species 4 The best-supported models of antilopine wallaroo and eastern grey kangaroo abundance included both habitat and the abundance of the other species, providing evidence of interspecific competition Contrastingly, models of common wallaroo abundance were largely influenced by climate and not the abundance of other species The abundance of antilopine wallaroos was most influenced by water availability, eastern grey kangaroo abundance and the frequency of late season fires The abundance of eastern grey kangaroos was most influenced by aspects of climate, antilopine wallaroo abundance and a measure of cattle abundance 5 Our study demonstrates that where census and habitat data are available, it is possible to reveal species' interactions (and measure their relative strength and direction) between large, mobile and/or widely-distributed species for which competition is difficult to demonstrate experimentally This allows discrimination of the influences of environmental factors and species interactions on species' distributions, and should therefore improve the predictive power of species distribution models
TL;DR: The results indicate that the New Guinean forest wallaby Dorcopsulus vanheurni , and the quokka Setonix brachyurus, represent successively closer sister-groups of other macropodines, and suggest that ingroup taxa are separated by very short internodes experimental error in outgroup-to-ingroup distances may seriously compromise determination of ingroup affinities.
Abstract: We generated a DNA hybridization matrix comparing eleven ‘true’ kangaroos (Macropodinae) and two outgroup marsupials, the rufous rat-kangaroo Aepyprymnas rufescens (Potoroinae) and the brush-tailed phalanger Trichosurus vulpecula (Phalangeridae). A small matrix included additional species of the genus Macropus (large kangaroos and wallabies). The results indicate that the New Guinean forest wallaby Dorcopsulus vanheurni , and the quokka Setonix brachyurus, represent successively closer sister-groups of other macropodines. The remaining taxa examined form two clades: the tree kangaroo Dendrolagus matschiei with the pademelons Thylogale and rock wallabies Petrogale , and Macropus including the swamp wallaby Wallabia bicolor . The smaller matrix of five Macropus species and Wallabia (with Dorcopsulus as an outgroup) pairs the red-necked wallaby M. rufogriseus and Parry's wallaby M. parryi , with the eastern grey kangaroo M. giganteus as their nearest relative; and associates the red kangaroo M. rufus and wallaroo M. robustus , with Wallabia as their sister-taxon. In the larger study, we found that inclusion of both outgroups provided little resolution among the macropodines, judging by jackknife and bootstrap tests. When Aepyprymnus was deleted, the Dendrolagus-Thylogale-Petrogale association obtained; with Trichosurus eliminated instead, the Wallabia-Macropus group was recovered. Only analysis of the eleven ingroup taxa by themselves gave a topology which supported both major clades. Our findings suggest that, at least for DNA hybridization studies, when ingroup taxa are separated by very short internodes experimental error in outgroup-to-ingroup distances may seriously compromise determination of ingroup affinities as well as the position of the root. We recommend that in such cases separate analyses with the outgroups sequentially eliminated and rigorous validation of the topology at each step should be conducted.