TL;DR: A new genus Ripella is established, with distinct morphology and sequence signatures for Vannella platypodia and morphologically similar species that form a clearly separate clade, very distant from other Vannellidae.
TL;DR: Characterizing microbial eukaryotes over a 12-month period provided insight into the occurrence of potential bacterial predators and hosts in premise plumbing and changes in the relative abundance of predators such as nematodes, copepods, and FLA appear to be related to temperature and seasonal changes in water quality.
Abstract: The goal of this study was to characterize microbial eukaryotes over a 12-month period to provide insight into the occurrence of potential bacterial predators and hosts in premise plumbing. Nearly 6,300 partial 18S rRNA gene sequences from 24 hot (36.9–39.0 °C) and cold (6.8–29.1 °C) drinking water samples were analyzed and classified into major eukaryotic groups. Each major group, consisting of free-living amoebae (FLA)/protozoa, algae, copepods, dinoflagellates, fungi, nematodes, and unique uncultured eukaryotic sequences, showed limited diversity dominated by a few distinct populations, which may be characteristic of oligotrophic environments. Changes in the relative abundance of predators such as nematodes, copepods, and FLA appear to be related to temperature and seasonal changes in water quality. Sequences nearly identical to FLA such as Hartmannella vermiformis, Echinamoeba thermarmum, Pseudoparamoeba pagei, Protacanthamoeba bohemica, Platyamoeba sp., and Vannella sp. were obtained. In addition to FLA, various copepods, rotifers, and nematodes have been reported to internalize viral and bacterial pathogens within drinking water systems thus potentially serving as transport hosts; implications of which are discussed further. Increasing the knowledge of eukaryotic occurrence and their relationship with potential pathogens should aid in assessing microbial risk associated with various eukaryotic organisms in drinking water.
TL;DR: In this article, the authors present a survey of the taxonomic criteria available for generic and species determination of amphizoic amoebae in freshwater and marine fish, and the limits of morphological and non-morphological approaches in species determination.
Abstract: Free-living amoebae infecting freshwater and marine fish include those described thus far as agents of fish diseases, associated with other disease conditions and isolated from organs of asymptomatic fish. This survey is based on information from the literature as well as on our own data on strains isolated from freshwater and marine fish. Evidence is provided for diverse fish-infecting amphizoic amoebae. Recent progress in the understanding of the biology of Neoparamoeba spp., agents responsible for significant direct losses in Atlantic salmon and turbot industry, is presented. Specific requirements of diagnostic procedures detecting amoebic infections in fish and taxonomic criteria available for generic and species determination of amphizoic amoebae are analysed. The limits of morphological and non-morphological approaches in species determination are exemplified by Neoparamoeba, Vannella and Platyamoeba spp., which are the most common amoebae isolated from fish gills, Acanthamoeba and Naegleria spp. isolated from various organs of freshwater fish, and by other unique fish isolates of the genera Nuclearia, Thecamoeba and Filamoeba. Advances in molecular characterisation of SSU rRNA genes and phylogenetic analyses based on their sequences are summarised. Attention is particularly given to specific diagnostic tools for fish-infecting amphizoic amoebae and ways for their further development.
TL;DR: Geosim was identified as the cause of a distinct earthy/grassy odour detected in cultures of a free-living amoeba, Vannella species.
Abstract: Geosim was identified as the cause of a distinct earthy/grassy odour detected in cultures of a free-living amoeba, Vannella species. Volatile components of cell lysates were isolated and concentrated by the Closed Loop Stripping method. Capillary, gas chromatography/mass spectrometry was used to identify odorous compounds. Bacterial symbionts observed in the cytoplasm of the amoebae may be responsible for production of the geosmin. This appears to be the first report of odorous compounds associated with a free-living protozoan and suggests that in some circumstances, Vannella sp. may contribute to taste and odour problems in drinking water.