TL;DR: A revised phylogenetic classification is proposed for the crane flies based on a synthesis of evidence from multiple genes and morphology, not consistent with the existing subfamilial classification of the ‘Limoniidae’, which is paraphyletic with respect to a well‐supported Tipulinae + Cylindrotominae clade.
Abstract: Tipuloidea, the crane flies, are a diverse lineage of true flies (Insecta: Diptera) whose phylogenetic classification and taxonomy remain a challenge. Here we present the results of a quantitative phylogenetic analysis of Tipuloidea based on combined morphological characters (adult, larvae and pupae) and nuclear gene sequence data (28S rDNA and CAD). Forty-five species, from 44 genera and subgenera, were sampled, representing the four putative families of Tipuloidea (Cylindrotomidae, Limoniidae, Pediciidae and Tipulidae sensu stricto). Analyses of individual datasets, although differing in overall topology, support the monophyly of several major lineages within Tipuloidea. Parsimony and Bayesian analyses using individual morphological and molecular datasets resulted in incongruent topologies. Increased resolution and tree support was obtained when both datasets (morphology and genes) were combined, in both combined evidence parsimony and Bayesian analyses, than when analysed separately. The recovered consensus phylogeny was not consistent with any previously proposed Tipuloidea classification, with previous importance assigned to character states shown here to represent losses and reversals seen as a major factor influencing erroneous classification. The results provided here, together with evidence from previous analyses, were used to append the Tipuloidea classification to supported evolutionary lineages. Tipuloidea is presented as two families: Pediciidae and Tipulidae. Pediciidae is recovered as the sister group to all remaining Tipuloidea. Our current phylogenetic hypothesis is not consistent with the existing subfamilial classification of the ‘Limoniidae’, which is paraphyletic with respect to a well-supported Tipulinae + Cylindrotominae clade, whereas the three ‘limoniid’ subfamilies are para- or polyphyletic. The recognition of ‘Limoniidae’ as a valid monophyletic family is discouraged and the subfamilies of ‘Limoniidae’ are amended and placed within Tipulidae. A revised phylogenetic classification is proposed for the crane flies based on a synthesis of evidence from multiple genes and morphology.
TL;DR: Two new species of the genus Nipponomyia Alexander are described from the Ryukyu Islands, with images of habitus and wings, illustrations of male and female terminalia, and distribution maps provided for the Japanese species.
Abstract: Japanese species of the genus Nipponomyia Alexander, 1924 are revised. Two new species, Nipponomyia okinawensis Kolcsar & Kato, sp. nov. and N. yakushimensis Kolcsar & Kato, sp. nov. are described from the Ryukyu Islands. Images of habitus and wings, illustrations of male and female terminalia, and distribution maps are provided for the Japanese species. A key to the world species of Nipponomyia is added. DNA barcodes of three Japanese Nipponomyia are provided, representing the first barcodes from the genus.
TL;DR: The results, although provisional, support the idea that the study of syninclusions is a useful instrument for understanding the structure of past communities.
Abstract: The composition of syninclusions was analyzed in three representative samples of the Late Eocene Rovno amber. Statistical analysis revealed a stable connection between three pairs of taxa in all three samples, viz., the midges Chironomidae and Ceratopogonidae; the flies Dolichopodidae and aphids Germaraphis; and the mite Glaesacarus rhombeus and Sciara zone dipterans (Sciaroidea, Tipuloidea, etc.). The first pair is interpreted as representing the assemblage of aeroplankton insects; the second, the assemblage of dwellers of the trunks of amber trees; and the third pair, the assemblage of dead wood consumers. The results, although provisional, support the idea that the study of syninclusions is a useful instrument for understanding the structure of past communities.
TL;DR: Trees inferred by Bayesian methods strongly support a sister-group relationship between Trichoceridae and Tipuloidea, and phylogenetic trees indicate that the family Limoniidae is a paraphyletic group.
Abstract: A traditionally controversial taxon, the Tipulomorpha has been frequently discussed with respect to both its familial composition and relationships with other Nematocera. The interpretation of internal relationships within the Tipuloidea, which include the Tipulidae sensu stricto, Cylindrotomidae, Pediciidae and Limoniidae, is also problematic. We sequenced the first complete mitochondrial (mt) genome of Symplecta hybrida (Meigen, 1804), which belongs to the subfamily Chioneinae of family Limoniidae, and another five nearly complete mt genomes from the Tipuloidea. We did a comparative analysis of these mt genomics and used them, along with some other representatives of the Nematocera to construct phylogenetic trees. Trees inferred by Bayesian methods strongly support a sister-group relationship between Trichoceridae and Tipuloidea. Tipulomorpha are not supported as the earliest branch of the Diptera. Furthermore, phylogenetic trees indicate that the family Limoniidae is a paraphyletic group.