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  4. 2008
Showing papers on "Support vector machine published in 2008"
Journal Article•
LIBLINEAR: A Library for Large Linear Classification

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Rong-En Fan1, Kai-Wei Chang1, Cho-Jui Hsieh1, Xiang-Rui Wang1, Chih-Jen Lin1 •
National Taiwan University1
01 Jun 2008-Journal of Machine Learning Research
TL;DR: LIBLINEAR is an open source library for large-scale linear classification that supports logistic regression and linear support vector machines and provides easy-to-use command-line tools and library calls for users and developers.
Abstract: LIBLINEAR is an open source library for large-scale linear classification. It supports logistic regression and linear support vector machines. We provide easy-to-use command-line tools and library calls for users and developers. Comprehensive documents are available for both beginners and advanced users. Experiments demonstrate that LIBLINEAR is very efficient on large sparse data sets.

8,609 citations

Libsvm : A library for support vector machines

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V. Ferrari
1 Jan 2008

8,087 citations

A Practical Guide to Support Vector Classication

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Hsu Chih-Wei, Chih-Chung Chang1, Chih-Jen Lin•
National Taiwan University1
1 Jan 2008
TL;DR: A simple procedure is proposed, which usually gives reasonable results and is suitable for beginners who are not familiar with SVM.
Abstract: Support vector machine (SVM) is a popular technique for classication. However, beginners who are not familiar with SVM often get unsatisfactory results since they miss some easy but signicant steps. In this guide, we propose a simple procedure, which usually gives reasonable results.

7,352 citations

Book•
Support Vector Machines

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Ingo Steinwart, Andreas Christmann
12 Aug 2008
TL;DR: This book explains the principles that make support vector machines (SVMs) a successful modelling and prediction tool for a variety of applications and provides a unique in-depth treatment of both fundamental and recent material on SVMs that so far has been scattered in the literature.
Abstract: This book explains the principles that make support vector machines (SVMs) a successful modelling and prediction tool for a variety of applications. The authors present the basic ideas of SVMs together with the latest developments and current research questions in a unified style. They identify three reasons for the success of SVMs: their ability to learn well with only a very small number of free parameters, their robustness against several types of model violations and outliers, and their computational efficiency compared to several other methods. Since their appearance in the early nineties, support vector machines and related kernel-based methods have been successfully applied in diverse fields of application such as bioinformatics, fraud detection, construction of insurance tariffs, direct marketing, and data and text mining. As a consequence, SVMs now play an important role in statistical machine learning and are used not only by statisticians, mathematicians, and computer scientists, but also by engineers and data analysts. The book provides a unique in-depth treatment of both fundamental and recent material on SVMs that so far has been scattered in the literature. The book can thus serve as both a basis for graduate courses and an introduction for statisticians, mathematicians, and computer scientists. It further provides a valuable reference for researchers working in the field. The book covers all important topics concerning support vector machines such as: loss functions and their role in the learning process; reproducing kernel Hilbert spaces and their properties; a thorough statistical analysis that uses both traditional uniform bounds and more advanced localized techniques based on Rademacher averages and Talagrand's inequality; a detailed treatment of classification and regression; a detailed robustness analysis; and a description of some of the most recent implementation techniques. To make the book self-contained, an extensive appendix is added which provides the reader with the necessary background from statistics, probability theory, functional analysis, convex analysis, and topology.

6,101 citations

Proceedings Article•10.1109/ICVGIP.2008.47•
Automated Flower Classification over a Large Number of Classes

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M.-E. Nilsback1, Andrew Zisserman1•
University of Oxford1
16 Dec 2008
TL;DR: Results show that learning the optimum kernel combination of multiple features vastly improves the performance, from 55.1% for the best single feature to 72.8% forThe combination of all features.
Abstract: We investigate to what extent combinations of features can improve classification performance on a large dataset of similar classes. To this end we introduce a 103 class flower dataset. We compute four different features for the flowers, each describing different aspects, namely the local shape/texture, the shape of the boundary, the overall spatial distribution of petals, and the colour. We combine the features using a multiple kernel framework with a SVM classifier. The weights for each class are learnt using the method of Varma and Ray, which has achieved state of the art performance on other large dataset, such as Caltech 101/256. Our dataset has a similar challenge in the number of classes, but with the added difficulty of large between class similarity and small within class similarity. Results show that learning the optimum kernel combination of multiple features vastly improves the performance, from 55.1% for the best single feature to 72.8% for the combination of all features.

4,300 citations

Proceedings Article•10.1109/CVPR.2008.4587756•
Learning realistic human actions from movies

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Ivan Laptev1, Marcin Marszalek1, Cordelia Schmid1, B. Rozenfeld2•
French Institute for Research in Computer Science and Automation1, Bar-Ilan University2
23 Jun 2008
TL;DR: A new method for video classification that builds upon and extends several recent ideas including local space-time features,space-time pyramids and multi-channel non-linear SVMs is presented and shown to improve state-of-the-art results on the standard KTH action dataset.
Abstract: The aim of this paper is to address recognition of natural human actions in diverse and realistic video settings. This challenging but important subject has mostly been ignored in the past due to several problems one of which is the lack of realistic and annotated video datasets. Our first contribution is to address this limitation and to investigate the use of movie scripts for automatic annotation of human actions in videos. We evaluate alternative methods for action retrieval from scripts and show benefits of a text-based classifier. Using the retrieved action samples for visual learning, we next turn to the problem of action classification in video. We present a new method for video classification that builds upon and extends several recent ideas including local space-time features, space-time pyramids and multi-channel non-linear SVMs. The method is shown to improve state-of-the-art results on the standard KTH action dataset by achieving 91.8% accuracy. Given the inherent problem of noisy labels in automatic annotation, we particularly investigate and show high tolerance of our method to annotation errors in the training set. We finally apply the method to learning and classifying challenging action classes in movies and show promising results.

4,182 citations

Proceedings Article•10.1109/CVPR.2008.4587597•
A discriminatively trained, multiscale, deformable part model

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Pedro F. Felzenszwalb1, David McAllester2, Deva Ramanan3•
University of Chicago1, Toyota Technological Institute at Chicago2, University of California, Irvine3
23 Jun 2008
TL;DR: A discriminatively trained, multiscale, deformable part model for object detection, which achieves a two-fold improvement in average precision over the best performance in the 2006 PASCAL person detection challenge and outperforms the best results in the 2007 challenge in ten out of twenty categories.
Abstract: This paper describes a discriminatively trained, multiscale, deformable part model for object detection. Our system achieves a two-fold improvement in average precision over the best performance in the 2006 PASCAL person detection challenge. It also outperforms the best results in the 2007 challenge in ten out of twenty categories. The system relies heavily on deformable parts. While deformable part models have become quite popular, their value had not been demonstrated on difficult benchmarks such as the PASCAL challenge. Our system also relies heavily on new methods for discriminative training. We combine a margin-sensitive approach for data mining hard negative examples with a formalism we call latent SVM. A latent SVM, like a hidden CRF, leads to a non-convex training problem. However, a latent SVM is semi-convex and the training problem becomes convex once latent information is specified for the positive examples. We believe that our training methods will eventually make possible the effective use of more latent information such as hierarchical (grammar) models and models involving latent three dimensional pose.

3,445 citations

Book•
Engineering Design via Surrogate Modelling: A Practical Guide

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Alexander I. J. Forrester, András Sóbester, Andy J. Keane
2 Sep 2008
TL;DR: This chapter discusses the design and exploration of a Surrogate-based kriging model, and some of the techniques used in that process, as well as some new approaches to designing models based on the data presented.
Abstract: Preface. About the Authors. Foreword. Prologue. Part I: Fundamentals. 1. Sampling Plans. 1.1 The 'Curse of Dimensionality' and How to Avoid It. 1.2 Physical versus Computational Experiments. 1.3 Designing Preliminary Experiments (Screening). 1.3.1 Estimating the Distribution of Elementary Effects. 1.4 Designing a Sampling Plan. 1.4.1 Stratification. 1.4.2 Latin Squares and Random Latin Hypercubes. 1.4.3 Space-filling Latin Hypercubes. 1.4.4 Space-filling Subsets. 1.5 A Note on Harmonic Responses. 1.6 Some Pointers for Further Reading. References. 2. Constructing a Surrogate. 2.1 The Modelling Process. 2.1.1 Stage One: Preparing the Data and Choosing a Modelling Approach. 2.1.2 Stage Two: Parameter Estimation and Training. 2.1.3 Stage Three: Model Testing. 2.2 Polynomial Models. 2.2.1 Example One: Aerofoil Drag. 2.2.2 Example Two: a Multimodal Testcase. 2.2.3 What About the k -variable Case? 2.3 Radial Basis Function Models. 2.3.1 Fitting Noise-Free Data. 2.3.2 Radial Basis Function Models of Noisy Data. 2.4 Kriging. 2.4.1 Building the Kriging Model. 2.4.2 Kriging Prediction. 2.5 Support Vector Regression. 2.5.1 The Support Vector Predictor. 2.5.2 The Kernel Trick. 2.5.3 Finding the Support Vectors. 2.5.4 Finding . 2.5.5 Choosing C and epsilon. 2.5.6 Computing epsilon : v -SVR 71. 2.6 The Big(ger) Picture. References. 3. Exploring and Exploiting a Surrogate. 3.1 Searching the Surrogate. 3.2 Infill Criteria. 3.2.1 Prediction Based Exploitation. 3.2.2 Error Based Exploration. 3.2.3 Balanced Exploitation and Exploration. 3.2.4 Conditional Likelihood Approaches. 3.2.5 Other Methods. 3.3 Managing a Surrogate Based Optimization Process. 3.3.1 Which Surrogate for What Use? 3.3.2 How Many Sample Plan and Infill Points? 3.3.3 Convergence Criteria. 3.3.4 Search of the Vibration Isolator Geometry Feasibility Using Kriging Goal Seeking. References. Part II: Advanced Concepts. 4. Visualization. 4.1 Matrices of Contour Plots. 4.2 Nested Dimensions. Reference. 5. Constraints. 5.1 Satisfaction of Constraints by Construction. 5.2 Penalty Functions. 5.3 Example Constrained Problem. 5.3.1 Using a Kriging Model of the Constraint Function. 5.3.2 Using a Kriging Model of the Objective Function. 5.4 Expected Improvement Based Approaches. 5.4.1 Expected Improvement With Simple Penalty Function. 5.4.2 Constrained Expected Improvement. 5.5 Missing Data. 5.5.1 Imputing Data for Infeasible Designs. 5.6 Design of a Helical Compression Spring Using Constrained Expected Improvement. 5.7 Summary. References. 6. Infill Criteria With Noisy Data. 6.1 Regressing Kriging. 6.2 Searching the Regression Model. 6.2.1 Re-Interpolation. 6.2.2 Re-Interpolation With Conditional Likelihood Approaches. 6.3 A Note on Matrix Ill-Conditioning. 6.4 Summary. References. 7. Exploiting Gradient Information. 7.1 Obtaining Gradients. 7.1.1 Finite Differencing. 7.1.2 Complex Step Approximation. 7.1.3 Adjoint Methods and Algorithmic Differentiation. 7.2 Gradient-enhanced Modelling. 7.3 Hessian-enhanced Modelling. 7.4 Summary. References. 8. Multi-fidelity Analysis. 8.1 Co-Kriging. 8.2 One-variable Demonstration. 8.3 Choosing X c and X e . 8.4 Summary. References. 9. Multiple Design Objectives. 9.1 Pareto Optimization. 9.2 Multi-objective Expected Improvement. 9.3 Design of the Nowacki Cantilever Beam Using Multi-objective, Constrained Expected Improvement. 9.4 Design of a Helical Compression Spring Using Multi-objective, Constrained Expected Improvement. 9.5 Summary. References. Appendix: Example Problems. A.1 One-Variable Test Function. A.2 Branin Test Function. A.3 Aerofoil Design. A.4 The Nowacki Beam. A.5 Multi-objective, Constrained Optimal Design of a Helical Compression Spring. A.6 Novel Passive Vibration Isolator Feasibility. References. Index.

2,837 citations

Proceedings Article•10.1145/1401890.1401920•
Learning classifiers from only positive and unlabeled data

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Charles Elkan1, Keith Noto1•
University of California, San Diego1
24 Aug 2008
TL;DR: This paper shows that models trained using the new methods perform better than the current state-of-the-art biased SVM method for learning from positive and unlabeled examples, and applies them to solve a real-world problem: identifying protein records that should be included in an incomplete specialized molecular biology database.
Abstract: The input to an algorithm that learns a binary classifier normally consists of two sets of examples, where one set consists of positive examples of the concept to be learned, and the other set consists of negative examples. However, it is often the case that the available training data are an incomplete set of positive examples, and a set of unlabeled examples, some of which are positive and some of which are negative. The problem solved in this paper is how to learn a standard binary classifier given a nontraditional training set of this nature.Under the assumption that the labeled examples are selected randomly from the positive examples, we show that a classifier trained on positive and unlabeled examples predicts probabilities that differ by only a constant factor from the true conditional probabilities of being positive. We show how to use this result in two different ways to learn a classifier from a nontraditional training set. We then apply these two new methods to solve a real-world problem: identifying protein records that should be included in an incomplete specialized molecular biology database. Our experiments in this domain show that models trained using the new methods perform better than the current state-of-the-art biased SVM method for learning from positive and unlabeled examples.

1,300 citations

Journal Article•10.1109/TGRS.2008.922034•
Spectral and Spatial Classification of Hyperspectral Data Using SVMs and Morphological Profiles

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Mathieu Fauvel1, Jon Atli Benediktsson2, Jocelyn Chanussot1, Johannes R. Sveinsson2•
Grenoble Institute of Technology1, University of Iceland2
21 Nov 2008-IEEE Transactions on Geoscience and Remote Sensing
TL;DR: An approach has been proposed which is based on using several principal components from the hyperspectral data and build morphological profiles which can be used all together in one extended morphological profile for classification of urban structures.
Abstract: A method is proposed for the classification of urban hyperspectral data with high spatial resolution. The approach is an extension of previous approaches and uses both the spatial and spectral information for classification. One previous approach is based on using several principal components (PCs) from the hyperspectral data and building several morphological profiles (MPs). These profiles can be used all together in one extended MP. A shortcoming of that approach is that it was primarily designed for classification of urban structures and it does not fully utilize the spectral information in the data. Similarly, the commonly used pixelwise classification of hyperspectral data is solely based on the spectral content and lacks information on the structure of the features in the image. The proposed method overcomes these problems and is based on the fusion of the morphological information and the original hyperspectral data, i.e., the two vectors of attributes are concatenated into one feature vector. After a reduction of the dimensionality, the final classification is achieved by using a support vector machine classifier. The proposed approach is tested in experiments on ROSIS data from urban areas. Significant improvements are achieved in terms of accuracies when compared to results obtained for approaches based on the use of MPs based on PCs only and conventional spectral classification. For instance, with one data set, the overall accuracy is increased from 79% to 83% without any feature reduction and to 87% with feature reduction. The proposed approach also shows excellent results with a limited training set.

1,222 citations

Proceedings Article•10.1145/1390156.1390208•
A dual coordinate descent method for large-scale linear SVM

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Cho-Jui Hsieh1, Kai-Wei Chang1, Chih-Jen Lin1, S. Sathiya Keerthi2, S. Sundararajan2 •
National Taiwan University1, Yahoo!2
5 Jul 2008
TL;DR: A novel dual coordinate descent method for linear SVM with L1-and L2-loss functions that reaches an ε-accurate solution in O(log(1/ε)) iterations is presented.
Abstract: In many applications, data appear with a huge number of instances as well as features. Linear Support Vector Machines (SVM) is one of the most popular tools to deal with such large-scale sparse data. This paper presents a novel dual coordinate descent method for linear SVM with L1-and L2-loss functions. The proposed method is simple and reaches an e-accurate solution in O(log(1/e)) iterations. Experiments indicate that our method is much faster than state of the art solvers such as Pegasos, TRON, SVMperf, and a recent primal coordinate descent implementation.
Proceedings Article•10.1109/CVPR.2008.4587630•
Classification using intersection kernel support vector machines is efficient

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Subhransu Maji1, Alexander C. Berg2, Jitendra Malik1•
University of California, Berkeley1, Yahoo!2
23 Jun 2008
TL;DR: It is shown that one can build histogram intersection kernel SVMs (IKSVMs) with runtime complexity of the classifier logarithmic in the number of support vectors as opposed to linear for the standard approach.
Abstract: Straightforward classification using kernelized SVMs requires evaluating the kernel for a test vector and each of the support vectors. For a class of kernels we show that one can do this much more efficiently. In particular we show that one can build histogram intersection kernel SVMs (IKSVMs) with runtime complexity of the classifier logarithmic in the number of support vectors as opposed to linear for the standard approach. We further show that by precomputing auxiliary tables we can construct an approximate classifier with constant runtime and space requirements, independent of the number of support vectors, with negligible loss in classification accuracy on various tasks. This approximation also applies to 1 - chi2 and other kernels of similar form. We also introduce novel features based on a multi-level histograms of oriented edge energy and present experiments on various detection datasets. On the INRIA pedestrian dataset an approximate IKSVM classifier based on these features has the current best performance, with a miss rate 13% lower at 10-6 False Positive Per Window than the linear SVM detector of Dalal & Triggs. On the Daimler Chrysler pedestrian dataset IKSVM gives comparable accuracy to the best results (based on quadratic SVM), while being 15times faster. In these experiments our approximate IKSVM is up to 2000times faster than a standard implementation and requires 200times less memory. Finally we show that a 50times speedup is possible using approximate IKSVM based on spatial pyramid features on the Caltech 101 dataset with negligible loss of accuracy.
Book•
Multiple Classifier Systems

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Nikunj C. Oza, Robi Polikar, Josef Kittler, Fabio Roli
1 Jan 2008
TL;DR: Novel computational approaches for deep learning of behaviors as opposed to just static patterns will be presented, based on structured nonnegative matrix factorizations of matrices that encode observation frequencies of behaviors.
Abstract: Future Directions -- Semi-supervised Multiple Classifier Systems: Background and Research Directions -- Boosting -- Boosting GMM and Its Two Applications -- Boosting Soft-Margin SVM with Feature Selection for Pedestrian Detection -- Observations on Boosting Feature Selection -- Boosting Multiple Classifiers Constructed by Hybrid Discriminant Analysis -- Combination Methods -- Decoding Rules for Error Correcting Output Code Ensembles -- A Probability Model for Combining Ranks -- EER of Fixed and Trainable Fusion Classifiers: A Theoretical Study with Application to Biometric Authentication Tasks -- Mixture of Gaussian Processes for Combining Multiple Modalities -- Dynamic Classifier Integration Method -- Recursive ECOC for Microarray Data Classification -- Using Dempster-Shafer Theory in MCF Systems to Reject Samples -- Multiple Classifier Fusion Performance in Networked Stochastic Vector Quantisers -- On Deriving the Second-Stage Training Set for Trainable Combiners -- Using Independence Assumption to Improve Multimodal Biometric Fusion -- Design Methods -- Half-Against-Half Multi-class Support Vector Machines -- Combining Feature Subsets in Feature Selection -- ACE: Adaptive Classifiers-Ensemble System for Concept-Drifting Environments -- Using Decision Tree Models and Diversity Measures in the Selection of Ensemble Classification Models -- Ensembles of Classifiers from Spatially Disjoint Data -- Optimising Two-Stage Recognition Systems -- Design of Multiple Classifier Systems for Time Series Data -- Ensemble Learning with Biased Classifiers: The Triskel Algorithm -- Cluster-Based Cumulative Ensembles -- Ensemble of SVMs for Incremental Learning -- Performance Analysis -- Design of a New Classifier Simulator -- Evaluation of Diversity Measures for Binary Classifier Ensembles -- Which Is the Best Multiclass SVM Method? An Empirical Study -- Over-Fitting in Ensembles of Neural Network Classifiers Within ECOC Frameworks -- Between Two Extremes: Examining Decompositions of the Ensemble Objective Function -- Data Partitioning Evaluation Measures for Classifier Ensembles -- Dynamics of Variance Reduction in Bagging and Other Techniques Based on Randomisation -- Ensemble Confidence Estimates Posterior Probability -- Applications -- Using Domain Knowledge in the Random Subspace Method: Application to the Classification of Biomedical Spectra -- An Abnormal ECG Beat Detection Approach for Long-Term Monitoring of Heart Patients Based on Hybrid Kernel Machine Ensemble -- Speaker Verification Using Adapted User-Dependent Multilevel Fusion -- Multi-modal Person Recognition for Vehicular Applications -- Using an Ensemble of Classifiers to Audit a Production Classifier -- Analysis and Modelling of Diversity Contribution to Ensemble-Based Texture Recognition Performance -- Combining Audio-Based and Video-Based Shot Classification Systems for News Videos Segmentation -- Designing Multiple Classifier Systems for Face Recognition -- Exploiting Class Hierarchies for Knowledge Transfer in Hyperspectral Data.
Journal Article•10.1016/J.CSDA.2007.08.015•
Empirical characterization of random forest variable importance measures

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Kellie J. Archer1, Ryan V. Kimes1•
Virginia Commonwealth University1
01 Jan 2008-Computational Statistics & Data Analysis
TL;DR: The RF methodology is attractive for use in classification problems when the goals of the study are to produce an accurate classifier and to provide insight regarding the discriminative ability of individual predictor variables.
Journal Article•10.1109/TKDE.2007.190672•
Label Propagation through Linear Neighborhoods

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Fei Wang1, Changshui Zhang1•
Tsinghua University1
01 Jan 2008-IEEE Transactions on Knowledge and Data Engineering
TL;DR: A novel graph-based semi supervised learning approach is proposed based on a linear neighborhood model, which assumes that each data point can be linearly reconstructed from its neighborhood, and can propagate the labels from the labeled points to the whole data set using these linear neighborhoods with sufficient smoothness.
Abstract: In many practical data mining applications such as text classification, unlabeled training examples are readily available, but labeled ones are fairly expensive to obtain. Therefore, semi supervised learning algorithms have aroused considerable interests from the data mining and machine learning fields. In recent years, graph-based semi supervised learning has been becoming one of the most active research areas in the semi supervised learning community. In this paper, a novel graph-based semi supervised learning approach is proposed based on a linear neighborhood model, which assumes that each data point can be linearly reconstructed from its neighborhood. Our algorithm, named linear neighborhood propagation (LNP), can propagate the labels from the labeled points to the whole data set using these linear neighborhoods with sufficient smoothness. A theoretical analysis of the properties of LNP is presented in this paper. Furthermore, we also derive an easy way to extend LNP to out-of-sample data. Promising experimental results are presented for synthetic data, digit, and text classification tasks.
Journal Article•10.1016/J.ESWA.2007.08.088•
Particle swarm optimization for parameter determination and feature selection of support vector machines

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Shih-Wei Lin1, Kuo-Ching Ying1, Shih-Chieh Chen2, Zne-Jung Lee1•
Huafan University1, National Taiwan University of Science and Technology2
01 Nov 2008-Expert Systems With Applications
TL;DR: Experimental results demonstrate that the classification accuracy rates of the developed approach surpass those of grid search and many other approaches, and that the developed PSO+SVM approach has a similar result to GA+S VM, Therefore, the PSO + SVM approach is valuable for parameter determination and feature selection in an SVM.
Abstract: Support vector machine (SVM) is a popular pattern classification method with many diverse applications. Kernel parameter setting in the SVM training procedure, along with the feature selection, significantly influences the classification accuracy. This study simultaneously determines the parameter values while discovering a subset of features, without reducing SVM classification accuracy. A particle swarm optimization (PSO) based approach for parameter determination and feature selection of the SVM, termed PSO+SVM, is developed. Several public datasets are employed to calculate the classification accuracy rate in order to evaluate the developed PSO+SVM approach. The developed approach was compared with grid search, which is a conventional method of searching parameter values, and other approaches. Experimental results demonstrate that the classification accuracy rates of the developed approach surpass those of grid search and many other approaches, and that the developed PSO+SVM approach has a similar result to GA+SVM. Therefore, the PSO+SVM approach is valuable for parameter determination and feature selection in an SVM.
Journal Article•10.1109/TBME.2008.919734•
Support Vector Machine-Based Classification Scheme for Myoelectric Control Applied to Upper Limb

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Mohammadreza Asghari Oskoei1, Huosheng Hu1•
University of Essex1
05 Mar 2008-IEEE Transactions on Biomedical Engineering
TL;DR: This work presents a method to adjust SVM parameters before classification, and examines overlapped segmentation and majority voting as two techniques to improve controller performance.
Abstract: This paper proposes and evaluates the application of support vector machine (SVM) to classify upper limb motions using myoelectric signals. It explores the optimum configuration of SVM-based myoelectric control, by suggesting an advantageous data segmentation technique, feature set, model selection approach for SVM, and postprocessing methods. This work presents a method to adjust SVM parameters before classification, and examines overlapped segmentation and majority voting as two techniques to improve controller performance. A SVM, as the core of classification in myoelectric control, is compared with two commonly used classifiers: linear discriminant analysis (LDA) and multilayer perceptron (MLP) neural networks. It demonstrates exceptional accuracy, robust performance, and low computational load. The entropy of the output of the classifier is also examined as an online index to evaluate the correctness of classification; this can be used by online training for long-term myoelectric control operations.
Journal Article•10.1371/JOURNAL.PCBI.1000173•
Support vector machines and kernels for computational biology.

[...]

Asa Ben-Hur1, Cheng Soon Ong2, Sören Sonnenburg2, Bernhard Schölkopf2, Gunnar Rätsch2 •
Colorado State University1, Max Planck Society2
31 Oct 2008-PLOS Computational Biology
TL;DR: Support vector machines are widely used in computational biology due to their high accuracy, their ability to deal with high-dimensional and large datasets, and their flexibility in modeling diverse sources of data.
Abstract: The increasing wealth of biological data coming from a large variety of platforms and the continued development of new high-throughput methods for probing biological systems require increasingly more sophisticated computational approaches. Putting all these data in simple-to-use databases is a first step; but realizing the full potential of the data requires algorithms that automatically extract regularities from the data, which can then lead to biological insight. Many of the problems in computational biology are in the form of prediction: starting from prediction of a gene's structure, prediction of its function, interactions, and role in disease. Support vector machines (SVMs) and related kernel methods are extremely good at solving such problems [1]–[3]. SVMs are widely used in computational biology due to their high accuracy, their ability to deal with high-dimensional and large datasets, and their flexibility in modeling diverse sources of data [2], [4]–[6]. The simplest form of a prediction problem is binary classification: trying to discriminate between objects that belong to one of two categories—positive (+1) or negative (−1). SVMs use two key concepts to solve this problem: large margin separation and kernel functions. The idea of large margin separation can be motivated by classification of points in two dimensions (see Figure 1). A simple way to classify the points is to draw a straight line and call points lying on one side positive and on the other side negative. If the two sets are well separated, one would intuitively draw the separating line such that it is as far as possible away from the points in both sets (see Figures 2 and ​and3).3). This intuitive choice captures the idea of large margin separation, which is mathematically formulated in the section Classification with Large Margin. Open in a separate window Figure 1 A linear classifier separating two classes of points (squares and circles) in two dimensions. The decision boundary divides the space into two sets depending on the sign of f(x) = 〈w,x〉+b. The grayscale level represents the value of the discriminant function f(x): dark for low values and a light shade for high values.
Book•
Modern Multivariate Statistical Techniques: Regression, Classification, and Manifold Learning

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Alan Julian Izenman
28 Aug 2008
TL;DR: Techniques covered range from traditional multivariate methods, such as multiple regression, principal components, canonical variates, linear discriminant analysis, factor analysis, clustering, multidimensional scaling, and correspondence analysis, to the newer methods of density estimation, projection pursuit, neural networks, and classification and regression trees.
Abstract: Remarkable advances in computation and data storage and the ready availability of huge data sets have been the keys to the growth of the new disciplines of data mining and machine learning, while the enormous success of the Human Genome Project has opened up the field of bioinformatics. These exciting developments, which led to the introduction of many innovative statistical tools for high-dimensional data analysis, are described here in detail. The author takes a broad perspective; for the first time in a book on multivariate analysis, nonlinear methods are discussed in detail as well as linear methods. Techniques covered range from traditional multivariate methods, such as multiple regression, principal components, canonical variates, linear discriminant analysis, factor analysis, clustering, multidimensional scaling, and correspondence analysis, to the newer methods of density estimation, projection pursuit, neural networks, multivariate reduced-rank regression, nonlinear manifold learning, bagging, boosting, random forests, independent component analysis, support vector machines, and classification and regression trees. Another unique feature of this book is the discussion of database management systems. This book is appropriate for advanced undergraduate students, graduate students, and researchers in statistics, computer science, artificial intelligence, psychology, cognitive sciences, business, medicine, bioinformatics, and engineering. Familiarity with multivariable calculus, linear algebra, and probability and statistics is required. The book presents a carefully-integrated mixture of theory and applications, and of classical and modern multivariate statistical techniques, including Bayesian methods. There are over 60 interesting data sets used as examples in the book, over 200 exercises, and many color illustrations and photographs.
Journal Article•10.1186/1471-2105-9-319•
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification

[...]

Alexander Statnikov1, Lily Wang1, Constantin F. Aliferis•
Vanderbilt University1
22 Jul 2008-BMC Bioinformatics
TL;DR: Both on average and in the majority of microarray datasets, random forests are outperformed by support vector machines both in the settings when no gene selection is performed and when several popular gene selection methods are used.
Abstract: Cancer diagnosis and clinical outcome prediction are among the most important emerging applications of gene expression microarray technology with several molecular signatures on their way toward clinical deployment. Use of the most accurate classification algorithms available for microarray gene expression data is a critical ingredient in order to develop the best possible molecular signatures for patient care. As suggested by a large body of literature to date, support vector machines can be considered "best of class" algorithms for classification of such data. Recent work, however, suggests that random forest classifiers may outperform support vector machines in this domain. In the present paper we identify methodological biases of prior work comparing random forests and support vector machines and conduct a new rigorous evaluation of the two algorithms that corrects these limitations. Our experiments use 22 diagnostic and prognostic datasets and show that support vector machines outperform random forests, often by a large margin. Our data also underlines the importance of sound research design in benchmarking and comparison of bioinformatics algorithms. We found that both on average and in the majority of microarray datasets, random forests are outperformed by support vector machines both in the settings when no gene selection is performed and when several popular gene selection methods are used.
Journal Article•10.1002/JMR.893•
Predicting linear B-cell epitopes using string kernels.

[...]

Yasser EL-Manzalawy, Drena Dobbs1, Vasant Honavar•
Iowa State University1
01 Jul 2008-Journal of Molecular Recognition
TL;DR: BCPred, a novel method for predicting linear B‐cell epitopes using the subsequence kernel, is proposed and it is shown that the predictive performance of BCPred outperforms 11 SVM‐based classifiers developed and evaluated in the authors' experiments as well as the implementation of AAP (AUC = 0.7).
Abstract: The identification and characterization of B-cell epitopes play an important role in vaccine design, immunodiagnostic tests, and antibody production Therefore, computational tools for reliably predicting linear B-cell epitopes are highly desirable We evaluated Support Vector Machine (SVM) classifiers trained utilizing five different kernel methods using fivefold cross-validation on a homology-reduced data set of 701 linear B-cell epitopes, extracted from Bcipep database, and 701 non-epitopes, randomly extracted from SwissProt sequences Based on the results of our computational experiments, we propose BCPred, a novel method for predicting linear B-cell epitopes using the subsequence kernel We show that the predictive performance of BCPred (AUC = 0758) outperforms 11 SVM-based classifiers developed and evaluated in our experiments as well as our implementation of AAP (AUC = 07), a recently proposed method for predicting linear B-cell epitopes using amino acid pair antigenicity Furthermore, we compared BCPred with AAP and ABCPred, a method that uses recurrent neural networks, using two data sets of unique B-cell epitopes that had been previously used to evaluate ABCPred Analysis of the data sets used and the results of this comparison show that conclusions about the relative performance of different B-cell epitope prediction methods drawn on the basis of experiments using data sets of unique B-cell epitopes are likely to yield overly optimistic estimates of performance of evaluated methods This argues for the use of carefully homology-reduced data sets in comparing B-cell epitope prediction methods to avoid misleading conclusions about how different methods compare to each other Our homology-reduced data set and implementations of BCPred as well as the APP method are publicly available through our web-based server, BCPREDS, at: http://ailabcsiastateedu/bcpreds/
Proceedings Article•10.1145/1390156.1390169•
An empirical evaluation of supervised learning in high dimensions

[...]

Rich Caruana1, Nikos Karampatziakis1, Ainur Yessenalina1•
Cornell University1
5 Jul 2008
TL;DR: To the surprise, the method that performs consistently well across all dimensions is random forests, followed by neural nets, boosted trees, and SVMs, and the effect of increasing dimensionality on the performance of the learning algorithms changes.
Abstract: In this paper we perform an empirical evaluation of supervised learning on high-dimensional data. We evaluate performance on three metrics: accuracy, AUC, and squared loss and study the effect of increasing dimensionality on the performance of the learning algorithms. Our findings are consistent with previous studies for problems of relatively low dimension, but suggest that as dimensionality increases the relative performance of the learning algorithms changes. To our surprise, the method that performs consistently well across all dimensions is random forests, followed by neural nets, boosted trees, and SVMs.
Journal Article•10.1016/J.ASOC.2007.10.007•
A distributed PSO-SVM hybrid system with feature selection and parameter optimization

[...]

Cheng-Lung Huang1, Jian-Fan Dun2•
National Kaohsiung First University of Science and Technology1, Huafan University2
1 Sep 2008
TL;DR: Experimental results showed the proposed PSO-SVM model can correctly select the discriminating input features and also achieve high classification accuracy.
Abstract: This study proposed a novel PSO-SVM model that hybridized the particle swarm optimization (PSO) and support vector machines (SVM) to improve the classification accuracy with a small and appropriate feature subset. This optimization mechanism combined the discrete PSO with the continuous-valued PSO to simultaneously optimize the input feature subset selection and the SVM kernel parameter setting. The hybrid PSO-SVM data mining system was implemented via a distributed architecture using the web service technology to reduce the computational time. In a heterogeneous computing environment, the PSO optimization was performed on the application server and the SVM model was trained on the client (agent) computer. The experimental results showed the proposed approach can correctly select the discriminating input features and also achieve high classification accuracy.
Journal Article•10.1016/J.JSS.2007.07.040•
Predicting defect-prone software modules using support vector machines

[...]

Karim O. Elish1, Mahmoud O. Elish1•
King Fahd University of Petroleum and Minerals1
01 May 2008-Journal of Systems and Software
TL;DR: Evaluating the capability of SVM in predicting defect-prone software modules and comparing its prediction performance against eight statistical and machine learning models in the context of four NASA datasets indicates that the prediction performance is generally better than or at least is competitive against the compared models.
Journal Article•10.1016/J.GEOMORPH.2008.02.011•
Landslide susceptibility mapping based on Support Vector Machine: A case study on natural slopes of Hong Kong, China

[...]

X. Yao1, L.G. Tham2, Fuchu Dai1•
Chinese Academy of Sciences1, University of Hong Kong2
01 Nov 2008-Geomorphology
TL;DR: An overview of the SVM, both one-class and two-class SVM methods, is first presented followed by its use in landslide susceptibility mapping, where it is concluded that two- class SVM possesses better prediction efficiency than logistic regression and one- Class SVM.
Journal Article•10.1016/J.NEUROIMAGE.2008.06.037•
Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns.

[...]

Federico De Martino1, Giancarlo Valente1, Noël Staeren1, John Ashburner2, Rainer Goebel1, Elia Formisano1 •
Maastricht University1, Wellcome Trust Centre for Neuroimaging2
15 Oct 2008-NeuroImage
TL;DR: Recursive Feature Elimination is evaluated in terms of sensitivity of discriminative maps (Receiver Operative Characteristic analysis) and generalization performances and compare it to previously used univariate voxel selection strategies based on activation and discrimination measures.
Journal Article•10.1016/J.EJOR.2006.12.004•
Application of machine learning techniques for supply chain demand forecasting

[...]

Réal A. Carbonneau1, Kevin Laframboise1, Rustam Vahidov1•
Concordia University1
01 Feb 2008-European Journal of Operational Research
TL;DR: The findings suggest that while recurrent neural networks and support vector machines show the best performance, their forecasting accuracy was not statistically significantly better than that of the regression model.
Journal Article•10.1016/J.ESWA.2007.05.028•
An empirical study of sentiment analysis for chinese documents

[...]

Songbo Tan1, Jin Zhang1•
Chinese Academy of Sciences1
01 May 2008-Expert Systems With Applications
TL;DR: The experimental results indicate that IG performs the best for sentimental terms selection and SVM exhibits the best performance for sentiment classification, and it is found that sentiment classifiers are severely dependent on domains or topics.
Abstract: Up to now, there are very few researches conducted on sentiment classification for Chinese documents. In order to remedy this deficiency, this paper presents an empirical study of sentiment categorization on Chinese documents. Four feature selection methods (MI, IG, CHI and DF) and five learning methods (centroid classifier, K-nearest neighbor, winnow classifier, Naive Bayes and SVM) are investigated on a Chinese sentiment corpus with a size of 1021 documents. The experimental results indicate that IG performs the best for sentimental terms selection and SVM exhibits the best performance for sentiment classification. Furthermore, we found that sentiment classifiers are severely dependent on domains or topics.
Journal Article•10.1016/J.ESWA.2006.10.043•
Neighborhood classifiers

[...]

Qinghua Hu1, Daren Yu1, Zongxia Xie1•
Harbin Institute of Technology1
01 Feb 2008-Expert Systems With Applications
TL;DR: The experimental results show that neighborhood-based feature selection algorithm is able to delete most of the redundant and irrelevant features and the classification accuracies based on neighborhood classifier is superior to K-NN, CART in original feature spaces and reduced feature subspaces, and a little weaker than SVM.
Abstract: K nearest neighbor classifier (K-NN) is widely discussed and applied in pattern recognition and machine learning, however, as a similar lazy classifier using local information for recognizing a new test, neighborhood classifier, few literatures are reported on. In this paper, we introduce neighborhood rough set model as a uniform framework to understand and implement neighborhood classifiers. This algorithm integrates attribute reduction technique with classification learning. We study the influence of the three norms on attribute reduction and classification, and compare neighborhood classifier with KNN, CART and SVM. The experimental results show that neighborhood-based feature selection algorithm is able to delete most of the redundant and irrelevant features. The classification accuracies based on neighborhood classifier is superior to K-NN, CART in original feature spaces and reduced feature subspaces, and a little weaker than SVM.
Journal Article•10.1016/J.ENGAPPAI.2007.07.001•
AdaBoost with SVM-based component classifiers

[...]

Xuchun Li1, Lei Wang1, Eric Sung1•
Nanyang Technological University1
01 Aug 2008-Engineering Applications of Artificial Intelligence
TL;DR: It is shown that AdaBoost incorporating properly designed RBFSVM (SVM with the RBF kernel) component classifiers, which is called AdaBoostSVM, can perform as well as SVM and demonstrates better generalization performance than SVM on imbalanced classification problems.
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