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  3. Support vector machine
  4. 1753
Showing papers on "Support vector machine published in 1753"
Repository•10.1021/acsomega.1c00463.s001•
Ranking-Oriented Quantitative Structure–Activity\nRelationship Modeling Combined with Assay-Wise Data Integration

[...]

1 Jan 1753
Abstract: In ligand-based drug design, quantitative structure–activity relationship (QSAR) models play an important role in activity prediction. One of the major end points of QSAR models is half-maximal inhibitory concentration (IC<sub>50</sub>). Experimental IC<sub>50</sub> data from various research groups have been accumulated in publicly accessible databases, providing an opportunity for us to use such data in predictive QSAR models. In this study, we focused on using a ranking-oriented QSAR model as a predictive model because relative potency strength within the same assay is solid information that is not based on any mechanical assumptions. We conducted rigorous validation using the ChEMBL database and previously reported data sets. Ranking support vector machine (ranking-SVM) models trained on compounds from similar assays were as good as support vector regression (SVR) with the Tanimoto kernel trained on compounds from all the assays. As effective ways of data integration, for ranking-SVM, integrated compounds should be selected from only similar assays in terms of compounds. For SVR with the Tanimoto kernel, entire compounds from different assays can be incorporated.
Repository•10.1021/acsami.4c06226.s001•
Screening of Functional\nSmall Molecules via Modified\nMachine Learning Strategy toward Efficient All-Inorganic Perovskite\nSolar Cells

[...]

1 Jan 1753
Abstract: Organic small molecules are proven to be capable of passivating the bulk/interfacial defects in inorganic perovskite solar cells. Considering the burdensome situation to screen the functional small molecules, we employ a modified machine learning (ML) strategy to guide screening suitable small molecules toward efficient solar cells through three modified ML algorithms to construct the prediction model: (i) random forest algorithm (RF), (ii) support vector machine algorithm (SVR), and (iii) XGBoost. Among them, the XGBoost algorithm displays a better overall predictive performance, whereby the <i>R</i><sup>2</sup> index reaches 0.939. Accordingly, eight small molecules are selected to modify the interface of perovskite films, and both the theoretical and experimental results certify that the difluoro­benzylamine with additional fluorine atoms has a better interface modification effect among the small molecules containing functional groups, e.g., the benzene ring and amino group. The high accuracy of the modified machine learning model enables us to simplify the small-molecule screening process and form an important step for ongoing developments in perovskite solar cells and other optoelectronic devices.
Repository•10.1021/acs.jpcc.4c00135.s001•
Amoxicillin-Induced\nPurine Molecules Were Used as\nBacterial Markers for SERS Detection and Recognition

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1 Jan 1753
Abstract: The amalgamation of surface-enhanced Raman spectroscopy (SERS) and machine learning (ML) presents a discerning capability to differentiate among a diverse spectrum of bacterial strains. However, addressing the challenge of achieving expeditious and robust bacterial detection remains a prominent focal point. This study delineates a comprehensive bacterial classification and identification methodology grounded in the amoxicillin response, which effectively categorizes bacteria utilizing SERS and ML within a time frame of less than 20 min. The bacterial specimens are subjected to pharmacological stimulation, inducing the release of purine molecules that are integral to metabolic processes. Capitalizing on the preferential entry of these molecules into SERS hot spots over the bacteria themselves facilitates the consistent acquisition of stable SERS signals. Experimental evidence demonstrates that the interaction of S. aureus, E. coli, S. epidermidis, C. albicans, and K. pneumoniae with amoxicillin contributes to an enhancement in the stability and signal intensity of bacterial SERS. Utilizing a random forest (RF) model on pure bacterial samples yields an exemplary classification accuracy of 99%. Furthermore, the application of three distinct models, support vector machine (SVM), RF, and CNN-LSTM-Attention (CLA) in the analysis of clinical samples culminates in final classification accuracies of 92%, 87%, and 96%, respectively. This approach establishes a rapid, straightforward, and stable classification methodology for SERS-based bacterial detection, demonstrating significant potential for clinical diagnostic applications.
Repository•10.1021/acs.langmuir.4c02357.s001•
Phase Stability\nof CH&lt;sub&gt;4&lt;/sub&gt; and CO&lt;sub&gt;2&lt;/sub&gt; Hydrates under Confinement Predicted\nby Machine Learning

[...]

1 Jan 1753
Abstract: Understanding the phase stability of gas hydrates under confinement is fundamental to the geological stability evolutions of gas hydrate systems on Earth. Herein, the phase stability of CH<sub>4</sub> and CO<sub>2</sub> hydrates under confinement is predicted by machine learning. Three machine learning models, including support vector machine, random forest, and gradient boosting decision tree, are constructed to predict the phase stability of CH<sub>4</sub> and CO<sub>2</sub> hydrates under confinement. Our machine learning results show that the prediction accuracy of the support vector machine model is highest, yet the prediction accuracy of the random forest model is lowest among those machine learning models in determining the phase stability of confined gas hydrates. Based on their performance in predicting the phase stability of confined gas hydrates, the support vector machine model with a training set fraction of 0.7 is finally chosen to deal with the unknown phase stability of confined gas hydrates. Importantly, the average accuracy of the support vector machine model can reach more than 90% in predicting the unknown phase stability of both CH<sub>4</sub> and CO<sub>2</sub> hydrates. The trained machine learning models can help us to quickly and accurately determine the phase stability of CH<sub>4</sub> and CO<sub>2</sub> hydrates under confinement in future applications.
Repository•10.1021/acs.jcim.2c01342.s001•
Machine Learning-Assisted\nRapid Screening of Four\nTypes of New Psychoactive Substances in Drug Seizures

[...]

1 Jan 1753
TL;DR: This study proposes machine learning models for rapid screening of new psychoactive substances (NPS) using mass spectrometric data, achieving an F1 score of 0.35-0.97, and successfully identifying six seizures of NPS.
Abstract: Over the past few years, new psychoactive substances (NPS) have become a global health and social problem because of their wide variety, constant structural renewal, vague legal definitions, and rapid adaptation to legal restrictions. The rapid structural modifications of NPS have posed significant challenges for the screening and identification of these new substances using traditional mass spectrometric techniques based on reference substances or a mass spectral database. Here, we propose supervised machine learning (ML) classification models such as k-nearest neighbors, support vector machine, random forest, and multigrained cascade forest for the rapid screening of NPS using mass spectrometric data. This approach utilizes ML methods to learn the statistical probability distributions of mass spectral data for NPS and non-NPS. Four classification ML models were generated and evaluated using a data set comprising 567 LC-MS and 732 GC-MS spectra. Through cross validation, we achieved an F1 score of 0.35–0.97. These algorithms were applied in conjunction with mass spectrometry techniques for the detection of six seizures including electronic cigarette oil and suspected powdered substances netted in drug trafficking cases. The models provided warning signals for synthetic cannabinoids, synthetic cathinones, and fentanyl. Thus, an early warning system was successfully established, which provided a useful method for reliable and effective identifications of unknown NPS.

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