Side reaction

Abstract: The authors describe the electrochemical reduction of CO/sub 2/ to CH/sub 4/ and C/sub 2/H/sub 4/ in aqueous alkaline solutions at Cu electrodes. The current at the Cu electrodes and the rate of hydrocarbon formation were monitored as a function of time over a temperature range from 0 to 48%C. Solutions of formate, formaldehyde, and methanol, possible intermediates in the reduction process, were also electrolyzed. Surface analyses (XPS and AES) were also performed on the Cu electrodes following electrolysis to identify surface intermediates. In addition to hydrocarbon formation, a poisoning process occurred, causing a deposit of a black film on the surface of the Cu cathode. XPS and AES studies indicated that the black film was graphitic carbon, probably the result of a side reaction, the reduction of CO/sub 2/ through formate to graphite. A tentative reaction mechanism for CO/sub 2/ reduction, based upon the data here and those of previous investigators, involving the reaction path CO/sub 2/{yields}CO{yields} surface-bound formyl (Cu-HCO){yields} surface-bound methylene (Cu-CH/sub 2/){yields} hydrocarbon products, is proposed.

Abstract: In this work, we report our findings on the use of radical thiol-ene chemistry for polymer–polymer conjugation. The manuscript combines the results from the Preparative Macromolecular Chemistry group from the Karlsruhe Institute of Technology (KIT) and the Polymer Chemistry Research group from Ghent University (UGent), which allowed for an investigation over a very broad range of reaction conditions. In particular, thermal and UV initiation methods for the radical thiol-ene process were compared. In the KIT group, the process was studied as a tool for the synthesis of star polymers by coupling multifunctional thiol core molecules with poly(n-butyl acrylate) macromonomers (MM), employing thermally decomposing initiators. The product purity and thus reaction efficiency was assessed via electrospray ionization mass spectrometry. Although the reactions with 10 or 5 equivalents of thiol with respect to macromonomer were successful, the coupling reaction with a one-to-one ratio of MM to thiol yielded only a fraction of the targeted product, besides a number of side products. A systematic parameter study such as a variation of the concentration and nature of the initiator and the influence of thiol-to-ene ratio was carried out. Further experiments with poly(styrene) and poly(isobornyl acrylate) containing a vinylic end group confirmed that thermal thiol-ene conjugation is far from quantitative in terms of achieving macromolecular star formation. In parallel, the UGent group has been focusing on photo-initiated thiol-ene chemistry for the synthesis of functional polymers on one hand and block copolymers consisting of poly(styrene) (PS) and poly(vinyl acetate) (PVAc) on the other hand. Various functionalization reactions showed an overall efficient thiol-ene process for conjugation reactions of polymers with low molecular weight compounds (∼90% coupling yield). However, while SEC and FT-IR analysis of the conjugated PS-PVAc products indicated qualitative evidence for a successful polymer–polymer conjugation, 1H NMR and elemental analysis revealed a low conjugation efficiency of about 23% for a thiol-to-ene ratio equal to one. Blank reactions using typical thiol-ene conditions indicated that bimolecular termination reactions occur as competitive side reactions explaining why a molecular weight increase is observed even though the thiol-ene reaction was not successful. The extensive study of both research groups indicates that radical thiol-ene chemistry should not be proposed as a straightforward conjugation tool for polymer–polymer conjugation reactions. Head-to-head coupling is a major reaction pathway, which interrupts the propagation cycle of the thiol-ene process. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 1699–1713, 2010

Abstract: Alkaline-induced beta-elimination of phosphate from phosphoserine and phosphothreonine residues followed by addition of an affinity tag has recently been pursued as a strategy for enriching phosphorylated species from complex mixtures. Here we report the use of an introduced thiol tag as the ligand for affinity purification via disulfide exchange with an activated thiol resin and the development of a protocol to improve the sensitivity considerably over previous reports (i.e., to subpicomole levels.) During our experiments, we observed a side reaction in which water was eliminated from unmodified serine residues. This side reaction resulted in the introduction of the affinity tag into unphosphorylated proteins, confounding attempts to specifically purify phosphoproteins from mixtures. Unchecked, this side reaction will also prevent application of the beta-elimination strategy to phosphopeptide samples where the phosphorylated species are minor components (i.e., most current phosphoproteomics applications). Quantitation of the side reaction products using three synthetic unphosphorylated peptides showed varying conversion efficiencies; at maximum, 1.7% of unphosphorylated peptide was converted to the affinity-tagged form. Inclusion of EDTA into the reaction reduced the side reaction but also greatly reduced the conversion efficiency of one of the phosphoserine residues of ovalbumin, suggesting a role for trace metal ions in the beta-elimination chemistry. Despite the presence of the side reaction, the affinity strategy was shown to be effective at enriching phosphopeptides from fairly complex peptide mixtures. The strategy was applied to the analysis of in vitro phosphorylation of bovine synapsin I by Ca(2+)/calmodulin-dependent kinase II, resulting in the identification of four phosphorylation sites, two of which have not been previously reported.