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  4. 2016
Showing papers on "R Programming Language published in 2016"
Book•
System Dynamics Modeling with R

[...]

Jim Duggan
14 Jun 2016
TL;DR: The focus is on the fundamental building blocks of system dynamics models, and the choice of R as a modeling language make it an ideal reference text for those wishing to integrate system dynamics modeling with related data analytic methods and techniques.
Abstract: This new interdisciplinary work presents system dynamics as a powerful approach to enable analysts build simulation models of social systems, with a view toward enhancing decision making. Grounded in the feedback perspective of complex systems, the book provides a practical introduction to system dynamics, and covers key concepts such as stocks, flows, and feedback. Societal challenges such as predicting the impact of an emerging infectious disease, estimating population growth, and assessing the capacity of health services to cope with demographic change can all benefit from the application of computer simulation. This text explains important building blocks of the system dynamics approach, including material delays, stock management heuristics, and how to model effects between different systemic elements. Models from epidemiology, health systems, and economics are presented to illuminate important ideas, and the R programming language is used to provide an open-source and interoperable way to build system dynamics models. System Dynamics Modeling with R also describes hands-on techniques that can enhance client confidence in system dynamic models, including model testing, model analysis, and calibration. Developed from the authors course in system dynamics, this book is written for undergraduate and postgraduate students of management, operations research, computer science, and applied mathematics. Its focus is on the fundamental building blocks of system dynamics models, and its choice of R as a modeling language make it an ideal reference text for those wishing to integrate system dynamics modeling with related data analytic methods and techniques.

46 citations

Proceedings Article•10.1109/ICNSURV.2016.7486327•
Aviation analytics and the Internet of Things

[...]

Paul Comitz1, Aaron Kersch•
University of Maryland, College Park1
19 Apr 2016
TL;DR: The analysis that is performed is an initial top level analysis, designed to assess the feasibility of using this low cost combination of hardware, software, and analysis tools for use in advisory air traffic applications such as airspace monitoring and traffic monitoring.
Abstract: This paper describes a series of short experiments collecting and analyzing ADS B data using IoT (Internet of Things) devices. The collection is performed using a Raspberry Pi single board computer, an RTL-SDR radio, custom software written for the project, and the open source dump1090 software program. This Raspberry Pi/RTL-SDR/dump1090 combination is used to collect ADS-B data. The data is captured and archived using a software program that reads the ADS-B data in real time as it is received by the RTL-SDR radio and subsequently output by the dump1090 program. The captured data is written to a series of flat files. Subsequent analytics and analysis is performed using the R programming language and the R Studio environment. The paper describes a subset of the R code that that was used in the analysis. All of the custom software used in this project is freely available at GitHub (see References section).

18 citations

Journal Article•10.1016/J.YMETH.2016.11.017•
Big Data Bioinformatics

[...]

Xue wen Chen, Jean X. Gao
01 Dec 2016-Methods
TL;DR: In this article, the authors introduce key concepts in the analysis of big data, including both machine learning algorithms as well as unsupervised and supervised examples of each of them, and note packages for the R programming language that are available to perform machine learning analyses.

17 citations

Posted Content•
RSSL: Semi-supervised Learning in R

[...]

Jesse H. Krijthe1, Jesse H. Krijthe2•
Delft University of Technology1, Leiden University Medical Center2
23 Dec 2016-arXiv: Machine Learning
TL;DR: This paper shows how the RSSL package can be used to replicate well-known results from the semi-supervised learning literature, and describes the methods it includes and comment on their use and implementation.
Abstract: In this paper, we introduce a package for semi-supervised learning research in the R programming language called RSSL. We cover the purpose of the package, the methods it includes and comment on their use and implementation. We then show, using several code examples, how the package can be used to replicate well-known results from the semi-supervised learning literature.

13 citations

Book•
Big Data Analytics with R

[...]

Simon Walkowiak
29 Jul 2016
TL;DR: In this paper, the authors present a practical guide to tackle Big Data problems using R programming language and its statistical environment, which is a leading programming language of data science, consisting of powerful functions to tackle all problems related to Big Data processing.
Abstract: Utilize R to uncover hidden patterns in your Big DataAbout This BookPerform computational analyses on Big Data to generate meaningful resultsGet a practical knowledge of R programming language while working on Big Data platforms like Hadoop, Spark, H2O and SQL/NoSQL databases,Explore fast, streaming, and scalable data analysis with the most cutting-edge technologies in the marketWho This Book Is ForThis book is intended for Data Analysts, Scientists, Data Engineers, Statisticians, Researchers, who want to integrate R with their current or future Big Data workflows.It is assumed that readers have some experience in data analysis and understanding of data management and algorithmic processing of large quantities of data, however they may lack specific skills related to R.What You Will LearnLearn about current state of Big Data processing using R programming language and its powerful statistical capabilitiesDeploy Big Data analytics platforms with selected Big Data tools supported by R in a cost-effective and time-saving mannerApply the R language to real-world Big Data problems on a multi-node Hadoop cluster, e.g. electricity consumption across various socio-demographic indicators and bike share scheme usageExplore the compatibility of R with Hadoop, Spark, SQL and NoSQL databases, and H2O platformIn DetailBig Data analytics is the process of examining large and complex data sets that often exceed the computational capabilities. R is a leading programming language of data science, consisting of powerful functions to tackle all problems related to Big Data processing.The book will begin with a brief introduction to the Big Data world and its current industry standards. With introduction to the R language and presenting its development, structure, applications in real world, and its shortcomings. Book will progress towards revision of major R functions for data management and transformations. Readers will be introduce to Cloud based Big Data solutions (e.g. Amazon EC2 instances and Amazon RDS, Microsoft Azure and its HDInsight clusters) and also provide guidance on R connectivity with relational and non-relational databases such as MongoDB and HBase etc. It will further expand to include Big Data tools such as Apache Hadoop ecosystem, HDFS and MapReduce frameworks. Also other R compatible tools such as Apache Spark, its machine learning library Spark MLlib, as well as H2O.Style and approachThis book will serve as a practical guide to tackling Big Data problems using R programming language and its statistical environment. Each section of the book will present you with concise and easy-to-follow steps on how to process, transform and analyse large data sets.

7 citations

Proceedings Article•10.1109/ROMA.2016.7847824•
Fast approach for automatic data retrieval using R programming language

[...]

Tran Duc Chung1, Rosdiazli Ibrahim1, Sabo Miya Hassan1, Nurfatihah Syalwiah Rosli1•
Universiti Teknologi Petronas1
1 Sep 2016
TL;DR: This work proposes a fast approach for automatic data retrieval using R, a powerful programming language for statistical and big data analysis, and based on the experiment results on a real dataset, significantly low processing time can be achieved using the approach.
Abstract: The development of big data analytics in recent years has enabled wide use of analysis tools such as R in various industries including robotics and automation. Its most recent reported application for data analysis is limited to only a small dataset and the processing time was not reported. Thus, this work proposes a fast approach for automatic data retrieval using R, a powerful programming language for statistical and big data analysis. The developed algorithm performs data retrieval using a source file and a map file as inputs and produces a desired output file. Based on the experiment results on a real dataset, significantly low processing time can be achieved using the approach. In addition, the developed algorithm is general and thus can be applied in various similar data retrieval applications such as pooling sub-dataset in manufacturing environment involving the use of robotics and automation.

5 citations

Journal Article•10.12688/F1000RESEARCH.9821.1•
A guide and best practices for R/Bioconductor tool integration in Galaxy

[...]

Nitesh Turaga1, Mallory A. Freeberg1, Dannon Baker1, John Chilton2, Galaxy Team, Anton Nekrutenko2, James Taylor1 •
Johns Hopkins University1, Pennsylvania State University2
24 Nov 2016-F1000Research
TL;DR: New functionalities to existing software that resolve dependency issues and semi-automate generation of tool integration components are introduced, so novice and experienced developers can easily integrate R/Bioconductor tools into Galaxy to make their work more accessible to the scientific community.
Abstract: Galaxy provides a web-based platform for interactive, large-scale data analyses, which integrates bioinformatics tools written in a variety of languages. A substantial number of these tools are written in the R programming language, which enables powerful analysis and visualization of complex data. The Bioconductor Project provides access to these open source R tools and currently contains over 1200 R packages. While some R/Bioconductor tools are currently available in Galaxy, scientific research communities would benefit greatly if they were integrated on a larger scale. Tool development in Galaxy is an early entry point for Galaxy developers, biologists, and bioinformaticians, who want to make their work more accessible to a larger community of scientists. Here, we present a guide and best practices for R/Bioconductor tool integration into Galaxy. In addition, we introduce new functionalities to existing software that resolve dependency issues and semi-automate generation of tool integration components. With these improvements, novice and experienced developers can easily integrate R/Bioconductor tools into Galaxy to make their work more accessible to the scientific community.

4 citations

Journal Article•10.1111/2041-210X.12469•
RNeXML: a package for reading and writing richly annotated phylogenetic, character and trait data in r

[...]

Carl Boettiger1, Scott Chamberlain1, Rutger A. Vos2, Hilmar Lapp3•
University of California, Berkeley1, Naturalis2, National Evolutionary Synthesis Center3
01 Mar 2016-Methods in Ecology and Evolution
TL;DR: RNeXML as mentioned in this paper is a package for reading and writing NeXML documents, including rich metadata, in a way that interfaces seamlessly with the extensive library of phylogenetic tools already available in the r ecosystem.
Abstract: Author(s): Boettiger, C; Chamberlain, S; Vos, R; Lapp, H | Abstract: NeXML is a powerful and extensible exchange standard recently proposed to better meet the expanding needs for phylogenetic data and metadata sharing. Here we present the RNeXML package, which provides users of the r programming language with easy-to-use tools for reading and writing NeXML documents, including rich metadata, in a way that interfaces seamlessly with the extensive library of phylogenetic tools already available in the r ecosystem. Wherever possible, we designed RNeXML to map NeXML document contents, whose arrangement is influenced by the format's XML Schema definition, to their most intuitive or useful representation in r. To make NeXML's powerful facility for recording semantically rich machine-readable metadata accessible to r users, we designed a functional programming interface to it that hides the semantic web standards leveraged by NeXML from r users who are unfamiliar with them. RNeXML can read any NeXML document that validates, and it generates valid NeXML documents from phylogeny and character data in various r representations in use. The metadata programming interface at a basic level aids fulfilling data documentation best practices, and at an advanced level preserves NeXML's nearly limitless extensibility, for which we provide a fully working demonstration. Furthermore, to lower the barriers to sharing well-documented phylogenetic data, RNeXML has started to integrate with taxonomic metadata augmentation services on the web, and with online repositories for data archiving. RNeXML allows r's rich ecosystem to read and write data in the NeXML format through an interface that is no more involved than reading or writing data from other, less powerful data formats. It also provides an interface designed to feel familiar to r programmers and to be consistent with recommended practices for r package development, yet that retains the full power for users to add their own custom data and metadata to the phylogenies they work with, without introducing potentially incompatible changes to the exchange standard.

4 citations

Journal Article•10.4995/HEAD16.2015.2421•
Study of ocean and wind energy potential with R: an innovative experience in the classroom

[...]

Alain Ulazia1, Gabriel Ibarra-Berastegi1•
University of the Basque Country1
06 Jun 2016-Headache
TL;DR: In this article, the authors present paradigmatic problems solved by the students and the results obtained by using R programming language for spatio-temporal analysis and graphical visualization of wind energy and wave energy potential.
Abstract: The Engineer School of Eibar initiated the Grade of Engineering in Renewable Energies four years ago. This pioneering educational project has shown many challenges to the teachers of the new grade. Among the different software skills used in this project, R programming language has been a very important one because of its capacity for spatio-temporal analysis and graphical visualization of wind energy and wave energy potential. A quarter of the subject's program in Wind Energy and Ocean Energy has been used via Problem Based Learning for the application of statistical calculus with R. The aim of this contribution is to show some paradigmatic problems solved by the students and the results obtained. Finally, the opinion of the students about the use of R and its learning potentiality have been gathered and analysed.

3 citations

Book Chapter•10.1007/978-3-319-27540-6_9•
E2LP Remote Laboratory: Introduction Course and Evaluation at Warsaw University of Technology

[...]

Rafał Kłoda1, Jan Piwiński1, Roman Szewczyk2•
Industrial Research Institute1, Warsaw University of Technology2
1 Jan 2016
TL;DR: Results of performed Remote Laboratory evaluation in Warsaw University of Technology are reported on, where the new learning model in Digital System Design course is introduced, and analysis and results of performed evaluation based on Computer System Usability Questionnaire are presented.
Abstract: Paper presents the results of Remote Laboratory services application into Embedded Systems Education, developed under Embedded Computer Engineering Learning Platform FP7 project. This paper reports on results of performed Remote Laboratory evaluation in Warsaw University of Technology, where we introduce the new learning model in Digital System Design course. Students got an introduction to Xilinx software environment, exercises laboratory example of fundamentals in VHDL programming language and introduction to different digital logic circuits and their operation. The paper presents the analysis and results of performed evaluation based on Computer System Usability Questionnaire. For data analysis R programming language and software environment for statistical computing and graphics was used.

1 citations

Posted Content•
Visually Pleasing Knot Projections in R

[...]

R Hankin
11 Oct 2016-arXiv: Geometric Topology
TL;DR: The knotR package as mentioned in this paper is a R-centric suite of software for the creation of production-quality artwork of knot diagrams, released under GPL2 and is optimized for visual appearance using the R programming language.
Abstract: In this short article I introduce the knotR package, which creates two dimensional knot diagrams optimized for visual appearance using the R programming language. The knotR package is a systematic R-centric suite of software for the creation of production-quality artwork of knot diagrams, released under GPL2.
Book Chapter•10.1007/978-3-319-23923-1_82•
The WUT database for modeling the visual quality

[...]

Rafał Kłoda1, Anna Ostaszewska-Liżewska1, Sabina Żebrowska-Łucyk1•
Warsaw University of Technology1
1 Jan 2016
TL;DR: A ready-to-use database containing a set of objective measures and Mean Opinion Scores (MOS) for the set of 40 video sequences is presented, to use the database in that environment.
Abstract: The article presents ready-to-use database containing a set of objective measures and Mean Opinion Scores (MOS) for the set of 40 video sequences. The format of published data enables to use a wide range of software. Additionally scripts for R (a programming language and software environment for statistical computing and graphics) are published, to use the database in that environment.
Proceedings Article•10.1109/MEMSTECH.2016.7507532•
Statistical methods for data prediction

[...]

Jan Andrzej Napieralski1•
Lodz University of Technology1
20 Apr 2016
TL;DR: A set of algorithms which allows to predict what will be the probability ratio of acquisition of the items form the given database is developed, mainly using R programming language.
Abstract: The main goal of the work presented in this paper was to develop a set of algorithms which allows to predict what will be the probability ratio of acquisition of the items form the given database. To fulfill this goal, the appropriate statistical methods were developed, mainly using R programming language. In order to apply the specific statistical methods, the appropriate database preprocessing was implemented.
Book Chapter•10.1007/978-3-319-56414-2_8•
RSSL: Semi-supervised Learning in R

[...]

Jesse H. Krijthe1, Jesse H. Krijthe2•
Delft University of Technology1, Leiden University Medical Center2
4 Dec 2016
TL;DR: In this article, a semi-supervised learning research in the R programming language called RSSL is introduced, which can be used to replicate well-known results from the semi supervised learning literature.
Abstract: In this paper, we introduce a package for semi-supervised learning research in the R programming language called RSSL. We cover the purpose of the package, the methods it includes and comment on their use and implementation. We then show, using several code examples, how the package can be used to replicate well-known results from the semi-supervised learning literature.

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