TL;DR: T his review presents an integrated overview of the various sequence-specific DNA-binding motifs which have so far been defined in transcriptional regulatory proteins of bacteria, fungi, and animals.
Abstract: T his review presents an integrated overview of the various sequence-specific DNA-binding motifs which have so far been defined in transcriptional regulatory proteins of bacteria, fungi, and animals. It is assumed that many if not all of these motifs will be shared by transcriptional regulatory proteins of higher plants. The review is organized in sections, one dealing with each motif. Because the various motifs are so distinct, certain general principles of protein-DNA recognition, particularly those stemming from symmetry considerations, are used to provide a rational basis for comparison. Other recent reviews may be consulted to obtain additional perspectives of this very large field (Ollis and White, 1987; Schlief, 1988; Johnson and McKnight, 1989; Struhl, 1989).
TL;DR: This list compiles available nucleotide sequence data for proteincoding genes in the chloroplast genome of various species, updating the compilation by Crouse et al. (1985).
Abstract: T his list compiles ttle available nucleotide sequence data for proteincoding genes in the chloroplast genome of various species, updating the compilation by Crouse et al. (1985). Cyanobacterial genes which have homologues in the chloroplast genome are included, as are genes of Cyanophora cyanelles. In addition to the sequences listed in Table I, the sequences of the entire chloroplast genomes of the liverwort Marchanlia polyrnorpha (Ohyama et al., 1986) and of tobacco (Nicoliana tabacum; Shinozaki et al., 1986) have been published. A number of reviews and analyses of the organisation of the chloroplast genome has been published in the light of these sequences (Shinozaki & Sugiura, 1986ab; Sugiura, 1987; Umesono & Ozeki, 1987; Ozeki et al., 1987; Ohyama eta I., 1988abc; Umesono et al., 1988; Fukuzawa et al., 1988; Kohchi et al., 1988b; Wolfe & Sharp, 1988; Sibbald, 1988). Rice chloroplast DNA has also been completely sequenced (Hirai et al., 1988). The compilation is current to October 1988. As well as the literature reference for each sequence, its entry name or accession number in GenBank (release 57, September 1988) is given where available. Accession numbers taken directly from the original literature are written in parentheses; these sequences are not in GenBank release 57. In a few cases the reference cited in Table I is not to the original publication of the sequence but to a more recent analysis of it.
TL;DR: Loiseaux-de Go,r, S., Y. Markowicz, J. Dalmon, and H. Audren as mentioned in this paper have described the two circular plastid DNA molecules of the brown alga Pylaiella littoralis (L.) Kjellm.
Abstract: Loiseaux-de Go,r, S., Y. Markowicz, J. Dalmon, and H. Audren. 1988. Physical maps of the two circular plastid DNA molecules of the brown alga Pylaiella littoralis (L.) Kjellm. Curt. Genet. 14:155-162. Markowicz, Y., R. Mache, and S. Loiseaux-De Go~r. 1988. Sequence of the plastid rDNA spacer region of the brown algas PylaieUa littoralis (L) Kjellm. Evolutionary significance. Plant Mol. Biol. 10:465469.