Abstract: Bicycloalkyl groups have been previously described as phenyl group bioisosteres. This article describes the synthesis of new building blocks allowing their introduction into complex molecules, and explores their use as a means to modify the physicochemical properties of drug candidates and improve the quality of imaging agents. In particular, the replacement of an aromatic ring with a bicyclo[1.1.1]pentane-1,3-diyl (BCP) group improves aqueous solubility by at least 50-fold, and markedly decreases nonspecific binding (NSB) as measured by CHI(IAM), the chromatographic hydrophobicity index on immobilized artificial membranes. Structural variations with the bicyclo[2.2.2]octane-1,4-diyl group led to more lipophilic molecules and did not show the same benefits regarding NSB or solubility, whereas substitutions with cubane-1,4-diyl showed improvements for both parameters. These results confirm the potential advantages of both BCP and cubane motifs as bioisosteric replacements for optimizing para-phenyl-substituted molecules.

Abstract: Metallic palladium surfaces are highly selective in promoting the reductive hydrolysis of aromatic ethers in aqueous phase at relatively mild temperatures and pressures of H2. At quantitative conversions, the selectivity to hydrolysis products of PhOR ethers was observed to range from 50 % (R=Ph) to greater than 90 % (R=n-C4H9, cyclohexyl, and PhCH2CH2). By analysis of the evolution of products with and without incorporation of H218O, the pathway was concluded to be initiated by palladium metal catalyzed partial hydrogenation of the phenyl group to an enol ether. Water then rapidly adds to the enol ether to form a hemiacetal, which then undergoes elimination to cyclohexanone and phenol/alkanol products. A remarkable feature of the reaction is that the stronger Ph−O bond is cleaved rather than the weaker aliphatic O−R bond.

Abstract: Photodriven electron transfer from a donor excited state to an assembly of electronically coupled acceptors has been proposed to enhance charge transfer efficiency in functional organic electronic materials. However, the circumstances under which this may occur are difficult to investigate in a controlled manner in disordered donor–acceptor materials. Here we investigate the effects of anion delocalization on electron transfer using zinc meso-tetraphenylporphyrin (ZnTPP) as a donor and a perylene-3,4:9,10-bis(dicarboximide) dimer as the acceptor (PDI2). The PDI units of the dimer are positioned in a cofacial orientation relative to one another by attachment of the imide group of each PDI to the 4- and 5-positions of a xanthene spacer. Furthermore, the distal imide group of one PDI is linked to the para-position of one ZnTPP phenyl group to yield ZnTPP-PDI2. The data for the dimer are compared to two different ZnTPP-PDI monomer reference systems designed to probe electron transfer to each of the individual...

Abstract: Emission gas and air contain not only CO2 but also plentiful moisture, making it difficult to achieve selective CO2 absorption without hydration. To generate absorbed CO2 (wet CO2) under heating, the need for external energy to release the absorbed water has been among the most serious problems in the fields of carbon dioxide capture and storage (CCS) and direct air capture (DAC). We found that the introduction of the hydrophobic phenyl group into alkylamines of CO2 absorbents improved the absorption selectivity between CO2 and water. Furthermore, ortho-, meta-, and para-xylylenediamines (OXDA, MXDA, PXDA, respectively) absorbed only CO2 in air without any hydration. Notably, MXDA·CO2 was formed as an anhydrous carbamic acid even in water, presumably because it was covered with hydrophobic phenyl groups, which induces a reverse lipid bilayer structure. Dry CO2 was obtained from heating MXDA·CO2 at 103–120 °C, which was revealed to involve chemically the Grignard reaction to form the resulting carboxylic a...

Abstract: In this article we report on the successful synthesis and isolation of cyclometalated Ir complexes having three different nonsymmetric ligands based on ligand-selective electrophilic reactions via interligand HOMO (highest occupied molecular orbital) hopping phenomena. It was hypothesized that the electrophilic substitution reactions of bis-heteroleptic Ir complexes having 8-benzenesulfonamidoquinoline as an ancillary ligand, 5a and 7, would proceed at the 5 position of the quinoline ring of these Ir complexes to afford 18 and 19, because their HOMOs are localized on the quinoline rings, as predicted by density functional theory (DFT) calculations. In these products, the HOMO is transferred to one of two ppy ligands, in which the phenyl group is trans to the Ir–N (1 position of quinoline) bond, and hence, the iodination or formylation of 18 and 19 occurs at the 5′ position of the ppy ligand to provide 20a, 23, and 24. Furthermore, we carried out the functionalization of 20a using cross-coupling reactions ...

Abstract: Here, aiming to adopt the phenyl–perfluorophenyl interaction to regulate molecular alignment and arrangement for crystal engineering, we examined and compared in detail the crystal structures of N,N′-diphenylurea compounds 1–6. We found that phenyl–perfluorophenyl interaction greatly influenced the intermolecular arrangement in the crystal, and we were able to prepare a cocrystal of 1 and 2, in which the molecules were alternately arranged under the control of the phenyl–perfluorophenyl interaction. This arrangement was driven by the asymmetric geometry of the hydrogen bonds in the cocrystal (1·2), in which 2, bearing two perfluorophenyl groups, worked as a better hydrogen bond donor. In contrast, NH connected to the phenyl group in 3 proved to be a better hydrogen bond donor due to the intramolecular resonance effect. N,N′-Dimethylated derivatives, 4–6, existed in cis-cis form in the crystal. Antiparallel carbonyl–carbonyl arrangements were observed in 4 and 6, while an unexpected carbonyl–perfluoropheny...

Abstract: Two iridium(III) complexes containing a C,N-bidentate pyridyl-triazolylidene ligand were prepared that are structurally very similar but differ in their pendant substituent. Whereas complex 1 contains a non-coordinating pyridyl unit, complex 2 has a phenyl group on the triazolylidene substituent. The presence of the basic pyridyl unit has distinct effects on the catalytic activity of the complex in the oxidative dehydrogenation of benzylic amines, inducing generally higher rates, higher selectivity towards formation of imines versus secondary amines, and notable quantities of tertiary amines when compared to the phenyl-functionalized analogue. The role of the pyridyl functionality has been elucidated from a set of stoichiometric experiments, which demonstrate hydrogen bonding between the pendant pyridyl unit and the amine protons of the substrate. Such Npyr⋅⋅⋅H−N interactions are demonstrated by X-ray diffraction analysis, 1H NMR, and IR spectroscopy, and suggest a pathway of substrate bond-activation that involves concerted substrate binding through the Lewis acidic iridium center and the Lewis basic pyridyl site appended to the triazolylidene ligand, in agreement with ligand–metal cooperative substrate activation.

Abstract: A series of fluorescent molecular rotors obtained by introducing two rotational groups ("rotators"), which exhibit different rotational and electron-donating abilities, are discussed. Whereas the control molecular rotor, PH, includes a single rotator (the widely used phenyl group), the PO molecular rotors consist of two rotators (a phenyl group and an alkoxy group), which exhibit simultaneous strongly electron-donating and easy rotational abilities. Compared with the control rotor PH, PO molecular rotors exhibited one order of magnitude higher quantum yield (fluorescence intensity) and simultaneously exhibited significantly higher fluorescence contrast. These properties are directly related to the strong electron-donating ability and low energy barrier of rotation of the alkoxy group, as confirmed by dynamic fluorescence experiments and quantum chemical calculations. The PO molecular rotors exhibited two fluorescence relaxation pathways, whereas the PH molecular rotor exhibited a single fluorescence relaxation pathway. Cellular fluorescence imaging with PO molecular rotors for mapping cellular viscosity was successfully demonstrated.

Abstract: Two new regioisomeric star-shaped tris(N-salicylideneaniline)s are synthesized and characterized. The arms of these star-shaped mesogens differ from each other with respect to the substitution on the 3,5-positions of the central 1,2,4-oxadiazole moieties. The unsymmetrical nature of substitution leads to a change in the distribution of electron density, which will have an effect on the type of columnar self-assembly. One of these molecules stabilizes the columnar hexagonal phase, while the other one stabilizes the columnar rectangular phase. The columnar rectangular phase, which requires enhanced intermolecular interactions, is observed in the case of the star-shaped molecule, where the trialkoxy phenyl group is connected at the 5-position of the heterocycle, whereas the columnar hexagonal phase is observed in the case of the star-shaped molecule, where the trialkoxy phenyl group is connected at the 3-position of the heterocycle. These compounds showed reduced melting points, clearing points and an enhanced mesophase range with respect to their symmetric counterpart (1,3,4-oxadiazole derivative) reported earlier. All the molecules exhibited green light emission in solution, with good quantum yield. The emission of 1,2,4-oxadiazole derivatives was considerably red-shifted in comparison to those of 1,3,4-oxadiazole derivatives. This study emphasizes how a minor change in the molecular structure brings about a beneficial change in the self-assembly characteristics of star-shaped molecules.

Abstract: A new BODIPY system displaying an intramolecular π–π-interaction was synthesized and studied. When the selenium center was oxidized, the substituted phenyl group undergoes π–π stacking with one side of the BODIPY core. The oxidized form showed, not only a down-field shift in the NMR peak, but also splitting due to geometrical changes that arise when going from Cs to C1. The compound was characterized by X-ray diffraction; DFT methods helped elucidate the influence of the unexpected π–π stack and its connection to the photophysical properties imparted by the Se oxidation.

Abstract: Low-molecular-weight gelators are interesting small molecules with potential applications as advanced materials. Carbohydrate-based small molecular gelators are especially useful because they are derived from renewable resources and are more likely to be biocompatible and biodegradable. Various 4,6-benzylidene acetal protected α-methyl 2-d-glucosamine derivatives have been found to be effective low-molecular-weight gelators. To understand the influence of the 4,6-benzylidene acetal functional group toward molecular self-assembly and to obtain effective molecular gelators, we synthesized and analyzed a new series of d-glucosamine derivatives in which the phenyl group of the acetal is replaced by a benzyl group. The homologation of the acetal protection from aromatic to aliphatic functional groups allows us to probe the effect of increasing structural flexibility on molecular self-assembly and gelation. In this study, nine representative amides and nine urea analogs were synthesized, and their gelation prop...

Abstract: A new method based on a palladium-catalyzed tandem reaction for the fast construction of a dianthraceno[a,e]pentalene (DAP) framework is developed, which gave a series of dianthraceno[a,e]pentalenes with good functional group tolerance, and it should be highlighted that five C–C bonds were formed in one reaction. The photophysical and electrochemical properties of DAP derivatives were examined in detail. Interestingly, cross conjugation can be observed for DAPs substituted with electron-withdrawing substituents, which results in decreased optical bandgaps and the highest occupied molecular orbital (HOMO) energy levels. Because of the good absorption features, high fluorescence quantum yield and appropriate frontier energy levels, dianthraceno[a,e]pentalene with a p-((2-hexyldecyl)-2-cyanoacetate)phenyl group (DAP-PhCA) was utilized for solution-processed bulk-heterojunction solar cells, which delivered a power conversion efficiency of 2.05% with a high open-circuit voltage (Voc) value of 0.95 V.

Abstract: Eight homologous series of 2-(or 3-)substituted phenyl 4ʹ-(4″-alkoxy (2ʹ-, or 3″-substituted phenylazo) benzoates (InXY) were prepared in which the suffix ‘X’ refers to the lateral substituent X attached to the terminal benzene ring that carries the alkoxy group, and the suffix ‘Y’ refers to the substituent attached to the other terminal phenyl group. Within each homologous series, the length of the terminal alkoxy group varies from 8 to 16 carbons, while the lateral polar substituents, X and Y, alternatively varies between CH3 and F. The mesophase behaviour was investigated by differential scanning calorimetry and identified by polarised optical microscopy. The results were discussed in terms of the polarity and steric effects of the two lateral substituents. Comparative correlations were made to investigate the effect of the second lateral substituent on the mesophase behaviour of the previously investigated mono-laterally substituted analogues. UV–vis spectroscopic study revealed that the compo...

Abstract: By comparison with close contact interactions between benzene rings there is a paucity of experimental data available for attractive interactions involving aromatic heterocyclic rings, especially for small molecules in solution. Herein we describe aromatic heterocyclic and carbocyclic edge-to face interactions and conformational stereodynamics of N-1,2-diphenylethyl imines bearing a phenyl group and either a 2-pyridyl, 3-pyridyl, 2-thiophene or 2-furanyl moiety on the imino carbon. X-ray crystal structures have been determined for two compounds. Slow rotation about the phenyl–imino bond in the E-isomers and around the heterocycle–imino bond in the Z-isomers of the pyridyl compounds was observed at low temperatures by NMR. Abnormally large shielding of one ortho hydrogen indicates that both the imino phenyl and heterocycle rings can engage in an edge-to-face interaction with the N-terminal phenyl moiety in the appropriate isomer. Some rotational barriers around the phenyl–imino and heterocycle–imino bonds were measured.

Abstract: We report on a series of eight diaryl-6-oxo-verdazyl radicals containing a tert-butyl group at the C(3) position with regard to their crystal structure and magnetic properties by means of magnetic susceptibility measurements in combination with quantum chemical calculations using a first-principles bottom-up approach. The latter method allows for a qualitative prediction and detailed analysis of the correlation between the solid-state architecture and magnetic properties. Although the perturbation in the molecular structure by varying the substituent on the N-aryl ring may appear small, the effects upon the structural parameters controlling intermolecular magnetic coupling interactions are strong, resulting in a wide spectrum of cooperative magnetic behavior. The non-substituted 1,5-diphenyl-tert-butyl-6-oxo-verdazyl radical features a ferromagnetic one-dimensional spin ladder type magnetic network-an extremely rarely observed phenomenon for verdazyl radicals. By varying substituents at the phenyl group, different non-isostructural compounds were obtained with widely different magnetic motifs ranging from linear and zigzag one-dimensional chains to potentially two-dimensional networks, from which we predict magnetic susceptibility data that are in qualitative agreement with experiments and reveal a large sensitivity to packing effects of the molecules. The present study advances the fundamental understanding between solid-state structure and magnetism in organically based radical systems.

Abstract: A series of zinc p-hydroxylphenylporphyrins was synthesized and characterized by spectroscopic and electrochemical methods in four different nonaqueous solvents. The investigated compounds are represented as [(p-HOPh)n(p-tBuPh)4-nP]Zn, where P represents the dianion of a porphyrin, Ph represents a phenyl group, HO and tBu are para substituents on the meso-phenyl rings of the macrocycle and n = 0–4. The four utilized nonaqueous solvents were dichloromethane (CH2Cl2), NN-dimethylformamide (DMF), dimethylsulfoxide (DMSO) and pyridine (Py) which were selected on the basis of their coordinating capabilities. The UV-visible spectra and redox potentials of each porphyrin were analyzed both as a function of Hammett substituent constants for groups at the para-positions of the meso-phenyl rings and as a function of the Gutmann solvent donor number which is related to the coordinating ability of the solvent. Each porphyrin exhibits two reductions in CH2Cl2, DMSO and Py while three reductions are observed in DMF, th...

Abstract: The synthesis and antibacterial activity of (7S)-7-(5-aryl-1,3,4-thiadiazol-2-yl-thio)-7-deoxylincomycin derivatives are described. These derivatives were mainly prepared by the Mitsunobu reaction of 2,3,4-tris-O-(trimethylsilyl)lincomycin and the corresponding thiols. Exploring structure–activity relationships of the substituent at the 5 position of a thiadiazole ring revealed that compounds with the ortho substituted phenyl group showed improved antibacterial activities against Streptococcus pneumoniae and Streptococcus pyogenes with erm gene compared with the reported compound (1) that had an unsubstituted benzene ring.

Abstract: Triphenylphosphoniumfluorenylide (TPPFY), a fluorescent fluorene attached molecule, showed polymorphism and benzene solvent induced aggregation enhanced emission (AEE) in the solid state. Crystallization from CH3CN produced non-fluorescent crystals of TPPFY (TPPFY-1), whereas intense yellow fluorescent crystals (plates and blocks) were obtained from benzene (TPPFY-2, λmax = 538 nm, Φf = 38%). Structural analysis indicates that TPPFY-1 exhibits strong π⋯π interactions (3.371–3.399 A) between fluorene units in the crystal lattice that quenched the solid state fluorescence. In contrast, the inclusion of a benzene molecule in TPPFY-2 prevents the close packing of fluorophores and shows intense yellow fluorescence in the solid state. TPPFY-2 showed only weak C–H⋯π interactions between fluorene and the phenyl group of triphenylphosphoniumylide. Hirshfeld surface analysis further supported the differences in the intermolecular interactions and molecular packing between TPPFY-1 and TPPFY-2. Interestingly, heating/strong crushing irreversibly converts fluorescent TPPFY-2 crystals to non-fluorescent TPPFY-1 crystals. However, recrystallization of TPPFY-1 from benzene produced fluorescent TPPFY-2 crystals. Thus TPPFY displays reversible off–on fluorescence switching heating/crushing and recrystallization. PXRD studies confirmed the polymorphism as well as the phase conversion of TPPFY-2 to TPPFY-1 by external stimuli. This study indicates the role of the benzene molecule in controlling the molecular packing and functional properties of TPPFY.