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  3. Phenotypic screening
  4. 2007
Showing papers on "Phenotypic screening published in 2007"
Journal Article•10.1016/J.CHEMBIOL.2007.02.004•
Identification of a small-molecule inhibitor of class Ia PI3Ks with cell-based screening.

[...]

Jiong Yang1, Alykhan F. Shamji1, Matchacheep Sirinya1, Stuart L. Schreiber1•
Massachusetts Institute of Technology1
20 Apr 2007-Chemistry & Biology
TL;DR: This study illustrates the power of unbiased, phenotypic screening as a means for illuminating cell circuitry, and resulted in the identification of a chemotype for selective inhibition of the class Ia PI3Ks.

51 citations

Journal Article•10.1074/MCP.M600102-MCP200•
An Antiproliferative Genetic Screening Identifies a Peptide Aptamer That Targets Calcineurin and Up-regulates Its Activity

[...]

Benoît de Chassey1, Ivan Mikaelian, Anne-Laure Mathieu, Marc Bickle, Delphine Olivier2, Didier Nègre2, François-Loïc Cosset2, Brian B Rudkin1, Pierre Colas1 •
Institut national de la recherche agronomique1, École Normale Supérieure2
01 Mar 2007-Molecular & Cellular Proteomics
TL;DR: This work has built a peptide aptamer library in a lentiviral expression system to isolate aptamers that inhibit cell proliferation in vitro and identified calcineurin A as a target protein candidate.

23 citations

Journal Article•10.1158/1535-7163.MCT-06-0496•
A duplexed phenotypic screen for the simultaneous detection of inhibitors of the molecular chaperone heat shock protein 90 and modulators of cellular acetylation

[...]

Anthea Hardcastle1, Peter Tomlin, Clair Norris, Juliet Richards, Matthew Cordwell, K. Boxall, Martin G. Rowlands, Keith Jones, Ian Collins, Edward McDonald, Paul Workman, Wynne Aherne •
Institute of Cancer Research1
01 Mar 2007-Molecular Cancer Therapeutics
TL;DR: A 384-well duplexed cell-based screen to simultaneously detect compounds that induce the co-chaperone HSP70 as a molecular marker of potential inhibitors of HSP90 together with those that modulate cellular acetylation proved reliable in high-throughput format and ∼64,000 compounds were screened.
Abstract: Histone deacetylases (HDACs), histone acetyltransferases (HATs), and the molecular chaperone heat shock protein 90 (HSP90) are attractive anticancer drug targets. High-throughput screening plays a pivotal role in modern molecular mechanism-based drug discovery. Cell-based screens are particularly useful in that they identify compounds that are permeable and active against the selected target or pathway in a cellular context. We have previously developed time-resolved fluorescence cell immunosorbent assays (TRF-Cellisas) for compound screening and pharmacodynamic studies. These assays use a primary antibody to the single protein of interest and a matched secondary immunoglobulin labeled with an europium chelate (Eu). The availability of species-specific secondary antibodies labeled with different lanthanide chelates provides the potential for multiplexing this type of assay. The approach has been applied to the development of a 384-well duplexed cell-based screen to simultaneously detect compounds that induce the co-chaperone HSP70 as a molecular marker of potential inhibitors of HSP90 together with those that modulate cellular acetylation (i.e., potential inhibitors of histone deacetylase or histone acetyltransferase activity). The duplexed assay proved reliable in high-throughput format and approximately 64,000 compounds were screened. Following evaluation in secondary assays, 3 of 13 hits from the HSP70 arm were confirmed. Two of these directly inhibited the intrinsic ATPase activity of HSP90 whereas the third seems to have a different mechanism of action. In the acetylation arm, two compounds increased cellular acetylation, one of which inhibited histone deacetylase activity. A third compound decreased cellular histone acetylation, potentially through a novel mechanism of action.

13 citations

Journal Article•10.2174/092986707780363005•
Genomic and proteomic screening of apoptosis mitochondrial regulators for drug target discovery.

[...]

Gaël Lecellier1, Catherine Brenner•
Centre national de la recherche scientifique1
31 Mar 2007-Current Medicinal Chemistry
TL;DR: A proteomic screening strategy is presented that led to the identification of a mitochondrial glutathione-S-transferase as a novel regulator of the pro-apoptotic adenine nucleotide translocase pore function.
Abstract: Screening strategies of therapeutic molecules and targets have received increasing attention during the past few years. Indeed, identification of novel compounds and drug targets involved in apoptosis control is a major rate-limiting step in anticancer drug development efforts. In this review, we discuss the current screening methodologies to discover novel potential therapeutics targets and drugs implicated in the apoptotic pathway, in particular the intrinsic pathway. In addition, we present a proteomic screening strategy that led us to identify a mitochondrial glutathione-S-transferase as a novel regulator of the pro-apoptotic adenine nucleotide translocase pore function.

12 citations

Journal Article•10.1016/J.CHEMBIOL.2007.04.002•
Chemical tools from biology-oriented synthesis.

[...]

Karl-Heinz Altmann1•
École Polytechnique Fédérale de Lausanne1
20 Apr 2007-Chemistry & Biology
TL;DR: Phenotypic screening of this compound collection provided new modulators of cell cycle progression and of viral cell entry with high hit rates.

7 citations

Journal Article•10.1517/17460441.2.10.1285•
Drug target discovery using retroviruses.

[...]

Magnus Blø1, David Micklem, James B. Lorens•
University of Bergen1
26 Sep 2007-Expert Opinion on Drug Discovery
TL;DR: Retroviruses provide a unique opportunity to stably deliver a variety of dominant genetic effectors to mammalian cells in a flexible predetermined fashion and are a favoured system for phenotypic screening.
Abstract: Contemporary drug target discovery relies on a continuum of genetic and chemical-based screening technologies. These approaches conflate pharmaceutical and genetic principles, providing a conceptual platform that links dominant genetics with drug action. Thus, phenotypic genetic screens using vector-expressed dominant genetic effectors – trans-acting molecules that modulate gene function, such as peptides or RNA interference triggers – can reveal genes whose inhibition engenders a therapeutic effect. The correlation of this genetic inhibition with a specific protein activity defines a drug target candidate. Retroviruses provide a unique opportunity to stably deliver a variety of dominant genetic effectors to mammalian cells in a flexible predetermined fashion and are a favoured system for phenotypic screening. Here, the authors review recent innovations and approaches to therapeutic target discovery using retroviral vectors.

4 citations

Journal Article•10.1016/J.DRUDIS.2006.10.006•
Drug-target identification in Drosophila cells: combining high-throughout RNAi and small-molecule screens

[...]

Norbert Perrimon1, Adam Friedman1, Bernard Mathey-Prevot1, Ulrike S. Eggert2•
Howard Hughes Medical Institute1, Harvard University2
01 Jan 2007-Drug Discovery Today
TL;DR: The RNAi screening platform that is established and made available to the community through the Drosophila RNAi Screening Center at Harvard Medical School is described and it is illustrated how the combination of RNAi and small-molecule HTS can lead to effective identification of targets in drug discovery.

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