TL;DR: The hydrolysis and transglycosylation properties of AmyM suggest that it has novel characteristics and can be regarded as an intermediate type of maltogenic amylase, α-amyl enzyme, and 4-α-glucanotransferase.
Abstract: It has been estimated that less than 1% of the microorganisms in nature can be cultivated by conventional techniques. Thus, the classical approach of isolating enzymes from pure cultures allows the analysis of only a subset of the total naturally occurring microbiota in environmental samples enriched in microorganisms. To isolate useful microbial enzymes from uncultured soil microorganisms, a metagenome was isolated from soil samples, and a metagenomic library was constructed by using the pUC19 vector. The library was screened for amylase activity, and one clone from among approximately 30,000 recombinant Escherichia coli clones showed amylase activity. Sequencing of the clone revealed a novel amylolytic enzyme expressed from a novel gene. The putative amylase gene (amyM) was overexpressed and purified for characterization. Optimal conditions for the enzyme activity of the AmyM protein were 42°C and pH 9.0; Ca2+ stabilized the activity. The amylase hydrolyzed soluble starch and cyclodextrins to produce high levels of maltose and hydrolyzed pullulan to panose. The enzyme showed a high transglycosylation activity, making α-(1, 4) linkages exclusively. The hydrolysis and transglycosylation properties of AmyM suggest that it has novel characteristics and can be regarded as an intermediate type of maltogenic amylase, α-amylase, and 4-α-glucanotransferase.
TL;DR: It is proposed here that AgdB is a novel α-glucosidase with unusually strong transglycosylation activity and synthesized as a single polypeptide precursor.
Abstract: Aspergillus nidulans possessed an alpha-glucosidase with strong transglycosylation activity. The enzyme, designated alpha-glucosidase B (AgdB), was purified and characterized. AgdB was a heterodimeric protein comprising 74- and 55-kDa subunits and catalyzed hydrolysis of maltose along with formation of isomaltose and panose. Approximately 50% of maltose was converted to isomaltose, panose, and other minor transglycosylation products by AgdB, even at low maltose concentrations. The agdB gene was cloned and sequenced. The gene comprised 3,055 bp, interrupted by three short introns, and encoded a polypeptide of 955 amino acids. The deduced amino acid sequence contained the chemically determined N-terminal and internal amino acid sequences of the 74- and 55-kDa subunits. This implies that AgdB is synthesized as a single polypeptide precursor. AgdB showed low but overall sequence homology to alpha-glucosidases of glycosyl hydrolase family 31. However, AgdB was phylogenetically distinct from any other alpha-glucosidases. We propose here that AgdB is a novel alpha-glucosidase with unusually strong transglycosylation activity.
TL;DR: Since the enzyme from the recombinant plasmid carrier could convert pullulan into not only panose but also glucose and maltose, it was concluded that these reactions were due to the single enzyme.
Abstract: A new type of pullulanase which mainly produced panose from pullulan was found in Bacillus stearothermophilus and purified. The enzyme can hydrolyze pullulan efficiently and only hydrolyzes a small amount of starch. When pullulan was used as a substrate, the main product was panose and small amounts of glucose and maltose were simultaneously produced. By using pTB522 as a vector plasmid, the enzyme gene was cloned and expressed in Bacillus subtilis. Since the enzyme from the recombinant plasmid carrier could convert pullulan into not only panose but also glucose and maltose, we concluded that these reactions were due to the single enzyme. The new pullulanase, with a molecular weight of 62,000, was fairly thermostable. The optimum temperature was 60 to 65 degrees C, and about 90% of the enzyme activity was retained even after treatment at 60 degrees C for 60 min. The optimum pH for the enzyme was 6.0.
TL;DR: ThMA not only hydrolyzed acarbose, an amylase inhibitor, to glucose and pseudotrisaccharide (PTS) but also transferred PTS to 17 sugar acceptors, including glucose, fructose, maltose, cellobiose, etc.
Abstract: Several maltogenic amylases (EC 3.2.1.-) and closely related enzymes were cloned from gram-positive bacteria, including Bacillus species (4, 13). The enzymes were different from typical amylases in that they (i) were not secreted outside the cell, (ii) preferred cyclodextrins to starch or pullulan as a substrate, and (iii) exhibited both transglycosylation and hydrolysis activities on various substrates. They hydrolyzed starch and β-cyclodextrin mainly to maltose and pullulan to panose. Many of these properties, if not all, were shared by some amylolytic enzymes, including neopullulanases (EC 3.2.1.135) and cyclomaltodextrinases (EC 3.2.1.54; CDases) (7, 10, 17, 20, 26).
The action modes of two maltogenic amylases (4, 13) and a CDase (17) isolated from three different Bacillus species were investigated by time course experiments with soluble starch or maltotriose as a substrate. The enzymes transferred a sugar molecule (donor) released after the hydrolysis of an α-(1,4)-glycosidic linkage to a reducing end of another sugar molecule (acceptor) by forming an α-(1,6)-glycosidic linkage. The coupled transglycosylation and hydrolysis activities of these enzymes were used for the production of branched oligosaccharides (BOS) from liquefied starch (15, 23), giving a more efficient process than the traditional one (31).
The maltogenic amylases from Bacillus licheniformis (BLMA [13]), Bacillus stearothermophilus (BSMA, [4]), and B. subtilis (unpublished data) could hydrolyze acarbose, an amylase inhibitor, at different levels of efficiency. Acarbose is a pseudotetrasaccharide that has a pseudosugar ring at the nonreducing end [4,5,6-trihydroxy-3-(hydroxymethyl)-2-cyclohexene-1-yl] linked to the nitrogen of 4-amino-4,6-dideoxy-d-glucopyranose (4-amino-4-deoxy-d-quinovo-pyranose), which is linked via an α-(1,4)-glycosidic linkage to maltose. The pseudotrisaccharide (PTS) resulting from the hydrolysis of acarbose by these enzymes was transferred to the C-6 of glucose forming isoacarbose. This indicated that the catalytic properties unique to maltogenic amylases are probably due to differences in the tertiary structures of the proteins. The primary structures of maltogenic amylases in four regions were well conserved, and their secondary structure was likely to constitute a (β/α)8-barrel domain as with other amylolytic enzymes (11, 12). The characterization of amylolytic enzymes that exhibit transglycosylation and/or cyclodextrin hydrolyzing activity at the level of protein structure and enzymatic properties would be quite useful for understanding catalytic activities and substrate binding patterns more precisely.
In this paper, we report on the cloning and physicochemical properties of another maltogenic amylase of a Thermus strain (ThMA) that was capable of hydrolyzing acarbose and transferring PTS to various acceptors. The enzyme was isolated from a thermophilic gram-negative bacterium, Thermus strain IM6501, and was more stable at high temperatures than other maltogenic amylases. Studies of the transferring activity of the thermostable enzyme by using acarbose and methylation of the resulting transfer products revealed additional modes of transglycosylation. Transglycosylation of a donor sugar molecule (PTS) to an acceptor molecule by forming an α-(1,3)-glycosidic linkage was demonstrated for the first time by using acarbose and ThMA.
TL;DR: This finding proves that one active center of neopullulanase participated in the dual activity toward alpha-(1----4)- and alpha-1----6)-glucosidic linkages.
Abstract: The active center of the neopullulanase from Bacillus stearothermophilus was analyzed by means of site-directed mutagenesis. The amino acid residues located in the active center of the neopullulanase were tentatively identified according to a molecular model of Taka-amylase A and homology analysis of the amino acid sequences of neopullulanse, Taka-amylase A, and other amylolytic enzymes. When amino acid residues Glu and Asp, corresponding to the putative catalytic sites, were replaced by the oppositely charged (His) or noncharged (Gln or Asn) amino acid residue, neopullulanase activities toward alpha-(1----4)- and alpha-(1----6)-glucosidic linkages disappeared. When the amino acids corresponding to the putative substrate-binding sites were replaced, the specificities of the mutated neopullulanases toward alpha-(1----4)- and alpha-(1----6)-glucosidic linkages were obviously different from that of the wild-type enzyme. This finding proves that one active center of neopullulanase participated in the dual activity toward alpha-(1----4)- and alpha-(1----6)-glucosidic linkages. Pullulan is a linear glucan of maltotriosyl units linked through alpha-(1----6)-glucosidic linkages. The production ratio of panose from pullulan was significantly increased by using the mutated neopullulanase which exhibited higher specificity toward the alpha-(1----4)-glucosidic linkage. In contrast, the production ratio of panose was obviously decreased by using the mutated neopullulanse which exhibited higher specificity toward the alpha-(1----6)-glucosidic linkage.