TL;DR: The geographical distribution of Delturinae, exclusively on the south-eastern Brazilian Shield, indicates that south-Eastern Brazil acts as either a refugium for basal loricariid taxa or a point of origin for the Loricariidae.
TL;DR: A strong influence of river capture is infer in the accumulation of modern clade species-richness values, the formation of the modern basin-wide species assemblages, and the presence of many low-diversity, early-branching lineages restricted to the Atlantic Coastal Drainages.
Abstract: The main objectives of this study are estimate a species-dense, time-calibrated molecular phylogeny of Hypoptopomatinae, Neoplecostominae, and Otothyrinae, which together comprise a group of armoured catfishes that is widely distributed across South America, to place the origin of major clades in time and space, and to demonstrate the role of river capture on patterns of diversification in these taxa. We used maximum likelihood and Bayesian methods to estimate a time-calibrated phylogeny of 115 loricariid species, using three mitochondrial and one nuclear genes to generate a matrix of 4,500 base pairs, and used parametric biogeographic analyses to estimate ancestral geographic ranges and to infer the effects of river capture events on the geographic distributions of these taxa. Our analysis recovered Hypoptopomatinae, Neoplecostominae, and Otothyrinae as monophyletic with strong statistical support, and Neoplecostominae as more closely related to Otothyrinae than to Hypoptopomatinae. Our time-calibrated phylogeny and ancestral-area estimations indicate an origin of Hypoptopomatinae, Neoplecostominae, and Otothyrinae during the Lower Eocene in the Atlantic Coastal Drainages, from which it is possible to infer several dispersal events to adjacent river basins during the Neogene. In conclusion we infer a strong influence of river capture in: (1) the accumulation of modern clade species-richness values; (2) the formation of the modern basin-wide species assemblages, and (3) the presence of many low-diversity, early-branching lineages restricted to the Atlantic Coastal Drainages. We further infer the importance of headwater stream capture and marine transgressions in shaping patterns in the distributions of Hypoptopomatinae, Neoplecostominae and Otothyrinae throughout South America.
TL;DR: The phylogenetic results indicate that the new genus and species from the Tocantins River basin is a sister taxon of all the other members of the Neoplecostominae, originating during the Eocene at 47.5 Mya (32.7–64. 5 Mya 95% HPD).
Abstract: This study presents the description of a new genus of the catfish subfamily Neoplecostominae from the Tocantins River basin. It can be distinguished from other neoplecostomine genera by the presence of (1) three hypertrophied bicuspid odontodes on the lateral portion of the body (character apparently present in mature males); (2) a large area without odontodes around the snout; (3) a post-dorsal ridge on the caudal peduncle; (4) a straight tooth series in the dentary and premaxillary rows; (5) the absence of abdominal plates; (6) a conspicuous series of enlarged papillae just posterior to the dentary teeth; and (7) caudal peduncle ellipsoid in cross section. We used maximum likelihood and Bayesian methods to estimate a time-calibrated tree with the published data on 116 loricariid species using one nuclear and three mitochondrial genes, and we used parametric biogeographic analyses (DEC and DECj models) to estimate ancestral geographic ranges and to infer the colonization routes of the new genus and the other neoplecostomines in the Tocantins River and the hydrographic systems of southeastern Brazil. Our phylogenetic results indicate that the new genus and species is a sister taxon of all the other members of the Neoplecostominae, originating during the Eocene at 47.5 Mya (32.7–64.5 Mya 95% HPD). The present distribution of the new genus and other neoplecostomines may be the result of a historical connection between the drainage basins of the Paraguay and Parana rivers and the Amazon basin, mainly through headwater captures.
TL;DR: In this paper, the authors presented cytogenetic analyses of four fish species belonging to four Loricariidae subfamilies: Neoplecostomus microps with 2n=54 chromosomes, Harttia loricariformis (Loricariinae), Hypostomus affinis (Hypostominae) with 2 n=66 chromosomes and Upsilodus sp.
Abstract: We present cytogenetic analyses of four fish species, belonging to four Loricariidae subfamilies: Neoplecostomus microps (Neoplecostominae) with 2n=54 chromosomes, Harttia loricariformis (Loricariinae) with 2n=56 chromosomes, Hypostomus affinis (Hypostominae) with 2n=66 chromosomes and Upsilodus sp. (Upsilodinae), with 2n=96 chromosomes. In addition to karyotypes, data on the location of 18s rDNA sites are presented, derived from indirect (silver nitrate impregnation) and direct (FISH) methods. There is only one pair of nucleolar organizing regions (NORs) per species, except in H. affinis. Diversity and NOR macrokaryotypic evolution in the species analyzed are discussed in relation to the evolution of the Loricariidae as a whole. In addition, a revision of the cytogenetic data available for this family is presented.