Matrix isolation

Abstract: When methane was passed over MgO at temperatures of approximately 500/sup 0/C, methyl radicals were produced on the surface, released into the gas phase, and trapped downstream in a solid argon matrix where they were analyzed by EPR spectroscopy. Significant differences in initial activity were observed, depending on whether the MgO was pretreated under vacuum or a flow of oxygen. Vacuum conditioning led to essentially no activity while oxygen conditioning resulted in substantial radical production. The oxidant of choice was also critical. Nitrous oxide resulted in a continuous decline of activity while in the presence of oxygen the formation of radicals was at a steady state. Doping of MgO with lithium, sodium, or iron was also examined. Lithium was found to greatly increase the activity up to a doping level of approximately 15.0 wt%. Two pathways are believed to be responsible for the radical formation. Over pure MgO, intrinsic cattion vacancies react with molecular oxygen to given an O/sup -/ center which can abstract a hydrogen atom from methane to produce the methyl radical. For the lithium-doped samples, substitutional Li/sup +/ ions react with molecular oxygen to form a (Li/sup +/O/sup -/) center which is also capable of abstracting amore » hydrogen atom from methane. 28 references, 5 figures, 3 tables.« less

Abstract: Matrix-assisted laser desorption time-of-flight mass spectrometry has been used to produce quasimolecular ion signals from underivatized mixed-base single-stranded DNA oligomers ranging from 10 to 67 nucleotides in length. These results were obtained with a new matrix material, 3-hydroxypicolinic acid (3-hydroxypyridine-2-carboxylic acid)which showed significant improvement over many previously reported matrices studied in terms of mass range available, signal-to-noise ratio, and the ability to analyze mixed base oligomers. The desorption and simultaneous ionization was by pulsed laser light at 10 to 50 mJ/cm2, studied at 266, 308, and 355 nm. Spectra taken at 266 nm provided the smallest amounts of doubly charged and dimer ions—characteristics desirable for DNA sequencing by this technology. Negative-ion spectra were uniformly superior to positive-ion spectra. This new matrix also is quite effective for molecular weight determinations of peptides and proteins in both positive- and negative-ion modes.

Abstract: 2,5-Dihydroxybenzoic acid (DHB) is the most commonly used matrix for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI/TOF) of oligosaccharides. Because acidic, sialylated oligosaccharides are detected at only the low picomole level with DHB, alternative matrices were screened to identify a matrix with a lower limit of detection. Negative-ion spectra of pure mono-, di-, and trisialylated oligosaccharides were acquired with either 6-aza-2-thiothymine or 2‘,4‘,6‘-trihydroxyacetophenone (THAP) in the linear mode. Detection limits of less than 50 fmol with signal-to-noise ratios of better than 5:1 were achieved with both matrices. THAP was the preferred matrix because it provided a lower limit of detection and gave less prompt fragmentation. Incorporation of ammonium citrate into the matrix, along with vacuum drying of the sample, was required in order to obtain maximum sensitivity with THAP. No evidence of competition for ionization was found when a mixture of mono-, di-, an...

Abstract: Infrared spectra of the water clusters have been measured in the N2 + O2 matrix. The aggregation process of water in the matrix has been monitored by annealing the deposited samples up to 40 K and UV irradiation. The monomer, dimer, cyclic trimer and cyclic pentamer are found as water clusters in the matrix. For the hexamer, several structures such as chair, cage, prism, bag 1 and/or book 1 are likely to exist. By UV irradiation, the cyclic pentamer is predominantly formed from the monomer and dimer. On the other hand, by annealing the deposited sample, several hexamers are formed. The theoretical calculation for water clusters has revealed that the formation of one hydrogen bonding in a hydrogen-bonded chain cooperatively enhances or diminishes the strength of another hydrogen bond. Both proton donor (D) and acceptor (A) participating in a hydrogen-bonding pair DA are capable of forming hydrogen bonding with the other water molecules; D can additionally accept two protons and donate one proton, and A can additionally donate two protons and accept one proton. We have proposed the classification of hydrogen-bonding patterns considering the cooperativity, denoting as d′a′DAd″a″, where d and a are integers indicating the number of proton donors and acceptors to D (the single prime) and A (the double prime), respectively. Then, a magnitude given by MOH = −d′ + a′ + d″ − a″ has been introduced, which is very useful for connecting the hydrogen-bonding patterns to their OH wavenumbers. As a result, it is revealed that the OH stretching bands of water clusters are characterized by eight indicators (free and MOH = −2, −1, 0, 1, 2, 3 and 4). The classification proposed here is applicable to the OH band analysis for the hydrogen-bonded water and alcohols in a condensed phase.