TL;DR: This study demonstrates that the COI sequence library of the Moorea BIOCODE project enables the identification of a large proportion of semi-digested fish, crustacean and mollusks found in the guts of three Hawkfish and two Squirrelfish species.
Abstract: Identifying species involved in consumer- resource interactions is one of the main limitations in the construction of food webs. DNA barcoding of prey items in predator guts provides a valuable tool for characterizing trophic interactions, but the method relies on the avail- ability of reference sequences to which prey sequences can be matched. In this study, we demonstrate that the COI sequence library of the Moorea BIOCODE project, an ecosystem-level barcode initiative, enables the identifi- cation of a large proportion of semi-digested fish, crusta- cean and mollusks found in the guts of three Hawkfish and two Squirrelfish species. While most prey remains lacked diagnostic morphological characters, 94% of the prey found in 67 fishes had (98% sequence similarity with BIOCODE reference sequences. Using this species-level prey identification, we demonstrate how DNA barcoding can provide insights into resource partitioning, predator feeding behaviors and the consequences of predation on ecosystem function.
TL;DR: The results suggest that Pocillopora increases site quality, but attracts greater densities of settlers and predators, resulting in increased density dependence and predation, which mask the underlying effects of Pocillipora on site quality (supporting the hypothesis of "cryptic density dependence").
Abstract: Heterogeneity in site quality can play an important role in patterns of abundance and population dynamics. Yet, estimating site quality in natural systems can be problematic because site quality can (1) vary through ontogeny for a focal organism, leading to shifts in site quality with age, (2) be confounded with (or masked by) variation in traits of individuals populating the sites, and (3) be correlated with local density. For example, if high- quality sites attract more individuals but vital rates are density dependent, then observed vital rates will be relatively homogeneous in space despite strong heterogeneity in site quality. Here, we operationally define site quality for a reef fish as the mean survival time of juveniles transplanted to sites at a common density and size structure, with random assignment of individuals to sites to remove potential confounding effects of local variation in individual quality and density. Our assays using juvenile age classes of the six-bar wrasse (Thalassoma hardwicke) showed that site quality varied in space (i.e., among patch reefs) but was constant through time. Site quality increased with availability of the branching coral Pocillopora (which is used as a refuge), but decreased with density of a predator, the arc-eye hawkfish, Paracirrhites arcatus (which also uses Pocillopora). We experimentally added colonies of Pocillopora to reefs and (1) increased site quality, (2) enhanced natural settlement rates of six- bar wrasse, but (3) attracted more hawkfish predators, and (4) did not increase survival of juvenile fish under ambient densities. Our results suggest that Pocillopora increases site quality, but attracts greater densities of settlers and predators, resulting in increased density dependence and predation, which mask the underlying effects of Pocillopora on site quality (supporting the hypothesis of ''cryptic density dependence''). Variation in site quality and the possible confounding effects of density and individual traits warrant more experimental study.
TL;DR: Evidence of consistently low prey body condition and energy reserves in a diverse suite of species at reefs with high predator abundance suggests that fishing may indirectly affect non-target prey-fish populations through changes in predation and predation risk.
Abstract: To examine the indirect effects of fishing on energy allocation in non-target prey species, condition and reproductive potential were measured for five representative species (two-spot red snapper Lutjanus bohar, arc-eye hawkfish Paracirrhites arcatus, blackbar devil Plectroglyphidodon dickii, bicolour chromis Chromis margaritifer and whitecheek surgeonfish Acanthurus nigricans) from three reef-fish communities with different levels of fishing and predator abundance in the northern Line Islands, central Pacific Ocean. Predator abundance differed by five to seven-fold among islands, and despite no clear differences in prey abundance, differences in prey condition and reproductive potential among islands were found. Body condition (mean body mass adjusted for length) was consistently lower at sites with higher predator abundance for three of the four prey species. Mean liver mass (adjusted for total body mass), an indicator of energy reserves, was also lower at sites with higher predator abundance for three of the prey species and the predator. Trends in reproductive potential were less clear. Mean gonad mass (adjusted for total body mass) was high where predator abundance was high for only one of the three species in which it was measured. Evidence of consistently low prey body condition and energy reserves in a diverse suite of species at reefs with high predator abundance suggests that fishing may indirectly affect non-target prey-fish populations through changes in predation and predation risk.
TL;DR: Patterns of color morph frequencies in P. arcatus may represent trade-offs between intraspecific communication and predation risk that exist at differing coral and fish densities in reef fishes.
Abstract: The arc-eye hawkfish Paracirrhites arcatus, like other congeners, has multiple color morphs whose relative abundances vary greatly among geographic locations. To gain insight into the environmental factors that potentially influence the morph distributions of this species, we conducted two series of surveys at different spatial scales. One extensive, broad-scale survey of 165 central, south, and western Pacific sites was conducted over a 9-yr period (1985-1993). Another series of sites, located along an exposure gradient on the leeward coast of the Island of Hawaii, was surveyed intensively during 1990-1994. Both surveys revealed that relative abundances of the species' two most common (white-striped, WS; melanistic, MEL) color morphs were independent of microhabitat, body size, or adult sex. MoTph frequencies were, however, generally related to bottom depth. Across Oceania, the WS morph was more common at depths > 10 m over a depth range of 1-27 m. At Hawaii, the WS morph increased in abundance at depths > 8 m over a range of 1-12 m and was relatively common at 1-4 m depths wherever frequently used branching corals (Pocillopora meandrina) were scarce. Patterns of color morph frequencies in P. arcatus may represent trade-offs between intraspecific communication and predation risk that exist at differing coral and fish densities. We also discuss morph distributions more generally relative to patterns observed for other, perhaps analogous polychromatisms in reef fishes.
TL;DR: The genetic results indicate an ecological barrier to gene flow initiated by habitat selection and enhanced by assortative mating in the arc‐eye hawkfish fulfil theoretical expectations for the earliest phase of speciation with gene flow.
Abstract: One of the primary challenges of evolutionary research is to identify ecological factors that favour reproductive isolation. Therefore, studying partially isolated taxa has the potential to provide novel insight into the mechanisms of evolutionary divergence. Our study utilizes an adaptive colour polymorphism in the arc-eye hawkfish (Paracirrhites arcatus) to explore the evolution of reproductive barriers in the absence of geographic isolation. Dark and light morphs are ecologically partitioned into basaltic and coral microhabitats a few metres apart. To test whether ecological barriers have reduced gene flow among dark and light phenotypes, we evaluated genetic variation at 30 microsatellite loci and a nuclear exon (Mc1r) associated with melanistic coloration. We report low, but significant microsatellite differentiation among colour morphs and stronger divergence in the coding region of Mc1r indicating signatures of selection. Critically, we observed greater genetic divergence between colour morphs on the same reefs than that between the same morphs in different geographic locations. We hypothesize that adaptation to the contrasting microhabitats is overriding gene flow and is responsible for the partial reproductive isolation observed between sympatric colour morphs. Combined with complementary studies of hawkfish ecology and behaviour, these genetic results indicate an ecological barrier to gene flow initiated by habitat selection and enhanced by assortative mating. Hence, the arc-eye hawkfish fulfil theoretical expectations for the earliest phase of speciation with gene flow.