Haddock

Abstract: The different factors that influence the prevalent decline in fish stocks are currently subject to urgent and intense scrutiny. Here we combine the use of remote-sensing satellite data with a long-term data set of haddock recruitment off the eastern continental shelf of Nova Scotia, Canada, to show that the survival of the larval fish depends on the timing of the local spring bloom of phytoplankton. This link has been suspected for more than 100 years, but its verification has had to wait for technology with sufficient spatial and temporal resolution.

Abstract: Here we present version 2.0 of HADDOCK, which incorporates considerable improvements and new features. HADDOCK is now able to model not only protein-protein complexes but also other kinds of biomolecular complexes and multi-component (N > 2) systems. In the absence of any experimental and/or predicted information to drive the docking, HADDOCK now offers two additional ab initio docking modes based on either random patch definition or center-of-mass restraints. The docking protocol has been considerably improved, supporting among other solvated docking, automatic definition of semi-flexible regions, and inclusion of a desolvation energy term in the scoring scheme. The performance of HADDOCK2.0 is evaluated on the targets of rounds 4-11, run in a semi-automated mode using the original information we used in our CAPRI submissions. This enables a direct assessment of the progress made since the previous versions. Although HADDOCK performed very well in CAPRI (65% and 71% success rates, overall and for unbound targets only, respectively), a substantial improvement was achieved with HADDOCK2.0.

Abstract: Seasonal closed areas have been an element of fishery management in New England waters since 1970 but before 1994 had limited impact on the conservation of groundfish stocks for which they were designed. Beginning in December of 1994, three large areas of historic importance to groundfish spawning and juvenile production on Georges Bank and in Southern New England, totaling 17,000 km 2 , were closed year-round to any gears capable of retaining groundfish (trawls, scallop dredges, gill nets, hook fishing). In the ensuing five years, the closed areas contributed significantly to reduced fishing mortality of depleted groundfish stocks. Placements of the closed areas afforded the greatest year-round protection to the shallow-sedentary assemblage of fishes (primarily flounders, skates, and miscellaneous others) and bivalve molluscs. Although the closures afforded less year-round protection to migratory age groups of Atlantic cod, Gadus morhua, and haddock, Melanogrammus aeglefinus, additional new regulations in open areas and in the Canadian portions of Georges Bank also contributed to the observed reductions in stock-wide fishing mortality rates. The areas were closed to dredge gear designed for sea scallops, Placopecten magellanicus, because of groundfish by-catch (particularly of flounders). Scallop biomass increased 14-fold within the closed areas during 1994-1998. In July 1998, total and harvestable scallop biomasses were 9 and 14 times denser, respectively, in closed than in adjacent open areas. A portion of the closed areas was designated a habitat area of particular concern on the basis of patterns of occurrence of juvenile groundfish in gravel/cobble sediment types. Managers reopened portions of one closed area to sea-scallop dredging in 1999, but restrictions on gear and areas fished were used to minimize groundfish by-catch and impact on juvenile cod and haddock on gravel substrates. Results from these reopenings have encouraged managers to contemplate a formal 'area rotation' scheme for scallops intended to improve yield per recruit. Closures of large portions of Georges Bank have proved to be an important element leading to more effective conservation of numerous resource and nonresource species, despite selection of the closed areas on the basis of seasonal spawning grounds of haddock and the distribution of yellowtail flounder, Limanda ferrugineus, in southern New England. In the future, factors other than fishing mortality reduction, including optimal placement to enhance larval production and to protect nursery areas and spawning concentrations, may well influence the selection of closed-area boundaries.

Abstract: To determine whether seismic exploration affected abundance or catch rates of cod (Gadus morhua) and haddock (Melanogrammus aeglefinus), acoustic mapping and fishing trials with trawls and longlines were conducted in the central Barents Sea 7 days before, 5 days during, and 5 days after seismic shooting with air guns. Seismic shooting severely affected fish distribution, local abundance, and catch rates in the entire investigation area of 40 × 40 nautical miles.Trawl catches of cod and haddock and longline catches of haddock declined on average by about 50% (by mass) after shooting started, which agreed with the acoustic abundance estimates; longline catches of cod were reduced by 21%. Reductions in catch rates were observed 18 nautical miles from the seismic shooting area (3 × 10 nautical miles), but the most pronounced reduction occurred within the shooting area, where trawl catches of both species and longline catches of haddock were reduced by about 70% and the longline catches of cod by 45%; a relatively greater reduction was found (in catches and acoustic estimates) for large (>60 cm) than for small fish. Abundance and catch rates did not return to preshooting levels during the 5-day period after seismic shooting ended.