Topic
Geminal
About: Geminal is a research topic. Over the lifetime, 2026 publications have been published within this topic receiving 47572 citations.
Papers published on a yearly basis
1 / 2
Papers
TL;DR: Weiner et al. as mentioned in this paper derived a new molecular mechanical force field for simulating the structures, conformational energies, and interaction energies of proteins, nucleic acids, and many related organic molecules in condensed phases.
Abstract: We present the derivation of a new molecular mechanical force field for simulating the structures, conformational energies, and interaction energies of proteins, nucleic acids, and many related organic molecules in condensed phases. This effective two-body force field is the successor to the Weiner et al. force field and was developed with some of the same philosophies, such as the use of a simple diagonal potential function and electrostatic potential fit atom centered charges. The need for a 10-12 function for representing hydrogen bonds is no longer necessary due to the improved performance of the new charge model and new van der Waals parameters. These new charges are determined using a 6-31G* basis set and restrained electrostatic potential (RESP) fitting and have been shown to reproduce interaction energies, free energies of solvation, and conformational energies of simple small molecules to a good degree of accuracy. Furthermore, the new RESP charges exhibit less variability as a function of the molecular conformation used in the charge determination. The new van der Waals parameters have been derived from liquid simulations and include hydrogen parameters which take into account the effects of any geminal electronegative atoms. The bonded parameters developed by Weiner et al. were modified as necessary to reproduce experimental vibrational frequencies and structures. Most of the simple dihedral parameters have been retained from Weiner et al., but a complex set of 4 and yj parameters which do a good job of reproducing the energies of the low-energy conformations of glycyl and alanyl dipeptides has been developed for the peptide backbone.
13,539 citations
TL;DR: Thirty-nine geminal dicationic ILs were synthesized and characterized in terms of their surface tensions, densities, melting points, refractive indices, viscosities, and miscibilities with a polar and nonpolar solvent.
Abstract: Thirty-nine geminal dicationic ILs were synthesized and characterized in terms of their surface tensions, densities, melting points, refractive indices, viscosities, and miscibilities with a polar and nonpolar solvent. Two imidazolium or pyrrolidinium cations were joined via different length hydrocarbon linkage chains (from 3 to 12 carbons long). The various geminal dications were paired with up to four different anions. The effect of the dication type, linkage chain, alkyl substituents, and anion type on the physicochemical properties of these compounds was examined. Among the more interesting findings for this class of compounds was that their liquid and thermal stability ranges generally exceeded those of the more conventional, better known ILs. Indeed, this range was from -4 to >400 degrees C for one of the pyrrolidinium-based geminal dicationic liquids. X-ray crystallography of the smaller solid ionic compounds indicated that there may be a correlation between the configurational degrees of freedom of the ILs and their melting points/glass transition temperatures. In one case, the crystal structure showed that a dicationic moiety had three distinct conformations in an asymmetric unit cell. The solvation properties of the geminal dicationic ILs tend to be similar to those of their monocationic analogues.
775 citations
TL;DR: In this paper, the authors employ the Slater-type function as a geminal basis function to incorporate the inter-electron distance in explicitly correlated theory, and show that the use of the Slater type geminals confers numerical and computational advantages over the previous explicitly correlated methods.
504 citations
TL;DR: Alongside polyfluorinated boranes, alanes are also ideal Lewis acids for FLP chemistry, and they can bind carbon dioxide reversibly.
Abstract: Catch it! Geminal phosphorus/aluminum-based frustrated Lewis pairs (FLPs) are easily obtained by hydroalumination of alkynylphosphines. These FLPs can activate terminal acetylenes by two competitive pathways, which were analyzed by DFT calculations, and they can bind carbon dioxide reversibly. Therefore, alongside polyfluorinated boranes, alanes are also ideal Lewis acids for FLP chemistry. © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
320 citations
Related Topics (5)
Performance Metrics
| Year | Papers |
|---|---|
| 2025 | 18 |
| 2024 | 65 |
| 2023 | 69 |
| 2022 | 106 |
| 2021 | 48 |
| 2020 | 44 |