TL;DR: A pattern of ancestral allele frequency distributions that reflects variation in population dynamics among geographic regions is observed and is consistent with the hypothesis of a serial founder effect with a single origin in sub-Saharan Africa.
Abstract: Human genetic diversity is shaped by both demographic and biological factors and has fundamental implications for understanding the genetic basis of diseases. We studied 938 unrelated individuals from 51 populations of the Human Genome Diversity Panel at 650,000 common single-nucleotide polymorphism loci. Individual ancestry and population substructure were detectable with very high resolution. The relationship between haplotype heterozygosity and geography was consistent with the hypothesis of a serial founder effect with a single origin in sub-Saharan Africa. In addition, we observed a pattern of ancestral allele frequency distributions that reflects variation in population dynamics among geographic regions. This data set allows the most comprehensive characterization to date of human genetic variation.
TL;DR: It is argued that, although founder effects may cause speciation under sufficiently stringent conditions, they are only one extreme of a continuous range of possibilities, and divergence may be driven in a variety of ways, without the need for drastic external changes.
Abstract: Are new species formed in rare catastrophes, distinct from the normal processes of phyletic evolution? Or does reproductive isolation evolve gradually, as a by-product of the divergence of gene pools? Mayr (120-124) has argued the former, holding that speciation usually results from genetic revolutions triggered by founder effects: An isolated population, small in numbers and in geographic extent, colonizes a new area. Both changes in selection pressures and genetic drift result in the rapid shift of many genes to a new, coadapted combination, which is reproductively isolated from the ancestral population. Carson (27, 29, 3 1) and Templeton (I175-180), among others, have put forward similar models. This cluster of theories is woven from many strands; we will try to tease these apart in order to find out precisely which processes may be involved in speciation by founder effect. By placing them in the context of other models, we will argue that, although founder effects may cause speciation under sufficiently stringent conditions, they are only one extreme of a continuous range of possibilities. Complete geographic isolation is unnecessary; absolute coadaptation between "closed" systems of alleles is unlikely; and divergence may be driven in a variety of ways, without the need for drastic external changes. Reproductive isolation is most likely to be built up gradually, in a
TL;DR: The concepts of "founder equivalent" and "founder genome equivalent" were introduced in this article to facilitate analysis of the founding stocks of captive or other populations for which pedigrees are available.
Abstract: The concepts of “founder equivalent” and “founder genome equivalent” are introduced to facilitate analysis of the founding stocks of captive or other populations for which pedigrees are available. The founder equivalents of a population are the number of equally contributing founders that would be expected to produce the same genetic diversity as in the population under study. Unequal genetic contributions by founders decrease the founder equivalents, portend greater inbreeding in future generations than would be necessary, and reflect a greater loss of the genetic diversity initially present in the founders. The number of founder genome equivalents of a population is that number of equally contributing founders with no random loss of founder alleles in descendants that would be expected to produce the same genetic diversity as in the population under study. The number of founder genome equivalents is approximately that number of wild-caught animals that would be needed to obtain the same amount of genetic diversity as is in the descendant captive population. Founder equivalents and founder genome equivalents allow comparison of the genetic merits of adding new wild-caught stock vs. further equalizing founder representations in a captive population.
TL;DR: The first population-based clinical and molecular genetic study of Leber hereditary optic neuropathy in a population of 2,173,800 individuals in the North East of England indicates that LHON is not rare but has a population prevalence similar to autosomally inherited neurological disorders.
Abstract: We performed the first population-based clinical and molecular genetic study of Leber hereditary optic neuropathy (LHON) in a population of 2,173,800 individuals in the North East of England. We identified 16 genealogically unrelated families who harbor one of the three primary mitochondrial DNA (mtDNA) mutations that cause LHON. Two of these families were found to be linked genetically to a common maternal founder. A de novo mtDNA mutation (G3460A) was identified in one family. The minimum point prevalence of visual failure due to LHON within this population was 3.22 per 100,000 (95% CI 2.47–3.97 per 100,000), and the minimum point prevalence for mtDNA LHON mutations was 11.82 per 100,000 (95% CI 10.38–13.27 per 100,000). These results indicate that LHON is not rare but has a population prevalence similar to autosomally inherited neurological disorders. The majority of individuals harbored only mutant mtDNA (homoplasmy), but heteroplasmy was detected in ∼12% of individuals. Overall, however, ∼33% of families with LHON had at least one heteroplasmic individual. The high incidence of heteroplasmy in pedigrees with LHON raises the possibility that a closely related maternal relative of an index case may not harbor the mtDNA mutation, highlighting the importance of molecular genetic testing for each maternal family member seeking advice about their risks of visual failure.