Eustigmatophyte

Abstract: Eukaryotic microalgae have developed CO2concentrating mechanisms to maximise the concentration of CO2 at the active site of Rubisco in response to the low CO2 concentrations in the external aquatic medium. In these organisms, the modes of inorganic carbon (Ci) uptake are diverse, ranging from diffusive CO2 uptake to the active transport of HCO3 -and CO2 and many have an external carbonic anhydrase to facilitate HCO3- use. There is unequivocal evidence for the mechanisms of Ci uptake in only about 25 species of microalgae of the chlorophyte, haptophyte, rhodophyte, diatom, and eustigmatophyte groups. Most of these species take up both CO2 and HCO3-, but the rates of uptake of each of these substrates varies with the algal species. A few species take up only one of the two forms of Ci, an adaptation that is not necessarily correlated with their ecological distribution. Evidence is presented for the active uptake of HCO3- and CO2 in two marine haptophytes,Isochrysis galbana Parke and Dicrateria inornata Parke, and for active transport of CO2 but lack of HCO3- uptake in two marine dinoflagellates, Amphidinium carteraeHulburt and Heterocapsa oceanica Stein.

Abstract: This chapter reviews the nature of pigment variations in phytoplankton in response to changes in light regime (irradiance, spectral composition and daylength). These changes belonging to processes called acclimation and/or adaptation maximize the evolutionary fitness of a species, within the constraints set by the environmental conditions (Raven and Geider, 2003). In general, adaptation indicates long-term evolutionary outcome based on the genes a given species obtains (genetic adaptation) while acclimation denotes adjustments in response to variation in key-environmental variables (physiological acclimation). Photo-acclimation corresponds to a mosaic of processes involving many cellular components and occurring over a broad range of time scales, from seconds to days. These processes, covering many physiological, biochemical, biophysical and biological changes, allow the optimization of cell activities, such as photosynthesis, respiration, growth and division when faced with changing irradiance (e.g., Herzig and Dubinsky, 1993; Anning et al., 2000; Raven and Geider, 2003). This is an important issue in phytoplankton ecology because of the fluctuating light environment experienced by pelagic algae, related to daylight variations together with the exponential decrease of light and the vertical – active or passive – movements of algae along the water column. In order to cope with these never-ending fluctuations in light-regime, marine phytoplankton can adjust their pigment pool, which is mainly constituted by two functional categories, namely pigments used for light harvesting and for photoprotection. Many accessory pigments constituting the light-harvesting complexes are photosynthetically active i.e. they are able to transfer the energy absorbed from sunlight to the photosynthetic reaction centers (RC) of photosystems (PS) II and I. They are called light harvesting pigments and include the photosynthetic carotenoids. However, some carotenoids are not involved in photosynthesis and do not transfer the absorbed energy to the RC. These non-photosynthetically active carotenoids are also called photoprotective carotenoids (PPC). The function and dynamics of long-term (hours-days) and short-term (minutes-hours) photo-acclimation are described in the following two sections (4.4.1 and 4.4.2, respectively). The long-term photo-acclimation response mainly consists in changes of structure and composition of the photosystems while the short-term photo-acclimation process mainly concerns the xanthophyll cycle (XC) activation and the associated non-photochemical fluorescence quenching (NPQ). In the third section (4.4.3), the ecophysiological variability of XC and its use as a biological tracer in oceanographic studies is reported.

Abstract: Oxygenic phototrophs typically utilize visible light (400–700 nm) to drive photosynthesis. However, a large fraction of the energy in sunlight is contained in the far-red region, which encompasses light beyond 700 nm. In nature, certain niche environments contain high levels of this far-red light due to filtering by other phototrophs, and in these environments, organisms with photosynthetic antenna systems adapted to absorbing far-red light are able to thrive. We used selective far-red light conditions to isolate such organisms in environmental samples. One cultured organism, the Eustigmatophyte alga Forest Park Isolate 5 (FP5), is able to absorb far-red light using a chlorophyll (Chl) a-containing antenna complex, and is able to grow under solely far-red light. Here we characterize the antenna system from this organism, which is able to shift the absorption of Chl a to >705 nm.

Abstract: Eustigmatophyceae (Ochrophyta, Stramenopiles) is a small algal group with species of the genus Nannochloropsis being its best studied representatives. Nuclear and organellar genomes have been recently sequenced for several Nannochloropsis spp., but phylogenetically wider genomic studies are missing for eustigmatophytes. We sequenced mitochondrial genomes (mitogenomes) of three species representing most major eustigmatophyte lineages, Monodopsis sp. MarTras21, Vischeria sp. CAUP Q 202 and Trachydiscus minutus, and carried out their comparative analysis in the context of available data from Nannochloropsis and other stramenopiles, revealing a number of noticeable findings. First, mitogenomes of most eustigmatophytes are highly collinear and similar in the gene content, but extensive rearrangements and loss of three otherwise ubiquitous genes happened in the Vischeria lineage; this correlates with an accelerated evolution of mitochondrial gene sequences in this lineage. Second, eustigmatophytes appear to be the only ochrophyte group with the Atp1 protein encoded by the mitogenome. Third, eustigmatophyte mitogenomes uniquely share a truncated nad11 gene encoding only the C-terminal part of the Nad11 protein, while the N-terminal part is encoded by a separate gene in the nuclear genome. Fourth, UGA as a termination codon and the cognate release factor mRF2 were lost from mitochondria independently by the Nannochloropsis and T. minutus lineages. Finally, the rps3 gene in the mitogenome of Vischeria sp. is interrupted by the UAG codon, but the genome includes a gene for an unusual tRNA with an extended anticodon loop that we speculate may serve as a suppressor tRNA to properly decode the rps3 gene.