TL;DR: This protocol uses two robust quenching methods for microbial cultures, the first of which, cold glycerol-saline quenched, causes reduced leakage of intracellular metabolites, thus allowing a more reliable separation of intra- and extracellular metabolites with simultaneous stopping of cell metabolism.
Abstract: This protocol describes an analytical platform for the analysis of intra- and extracellular metabolites of microbial cells (yeast, filamentous fungi and bacteria) using gas chromatography-mass spectrometry (GC-MS). The protocol is subdivided into sampling, sample preparation, chemical derivatization of metabolites, GC-MS analysis and data processing and analysis. This protocol uses two robust quenching methods for microbial cultures, the first of which, cold glycerol-saline quenching, causes reduced leakage of intracellular metabolites, thus allowing a more reliable separation of intra- and extracellular metabolites with simultaneous stopping of cell metabolism. The second, fast filtration, is specifically designed for quenching filamentous micro-organisms. These sampling techniques are combined with an easy sample-preparation procedure and a fast chemical derivatization reaction using methyl chloroformate. This reaction takes place at room temperature, in aqueous medium, and is less prone to matrix effect compared with other derivatizations. This protocol takes an average of 10 d to complete and enables the simultaneous analysis of hundreds of metabolites from the central carbon metabolism (amino and nonamino organic acids, phosphorylated organic acids and fatty acid intermediates) using an in-house MS library and a data analysis pipeline consisting of two free software programs (Automated Mass Deconvolution and Identification System (AMDIS) and R).
TL;DR: A modified high-performance liquid chromatography method of pre-column derivatization with 1-phenyl-3-methyl-5-pyrazolone (PMP) has been established for high resolution separation and high sensitivity determination of ten monosaccharides simultaneously, which frequently occur in algae polysaccharides as mentioned in this paper.
TL;DR: The method allowed the determination of the migrating levels of bisphenols found in food cans, and it was validated for linearity, detection and quantitation limits, selectivity, accuracy and precision.
Abstract: An environmentally friendly sample pretreatment system based on solid-phase microextraction (SPME) for the sensitive determination of bisphenol A (BPA), bisphenol S (BPS) and biphenol (BP) is described. Two derivatisation reactions to obtain volatile derivatives are compared. Derivatisation with acetic anhydride (AA) was performed in situ in a 5-mM Na2CO3/NaHCO3 buffer solution and analytes were extracted by direct immersion (DI) using a PA fibre (85 µm) at 90°C for 40 min with stirring at 1,500 rpm. For derivatisation with bis-(trimethylsilyl)trifluoroacetamide (BSTFA), the analytes were first extracted by DI using the PA fibre at 70°C for 40 min with stirring at 500 rpm. The fibre was then removed, dried in a nitrogen stream for 2 min and introduced into the headspace of BSTFA at 50°C for 30 s. After derivatisation, the analytes were desorbed in the injection port of the GC in the splitless mode at 280°C for 4 min. The separation was carried out by coupling gas chromatography with mass spectrometry in the selected ion monitoring mode, GC-MS(SIM). The method allowed the determination of the migrating levels of bisphenols found in food cans, and it was validated for linearity, detection and quantitation limits, selectivity, accuracy and precision. Detection limits ranged from 3 to 16 pg mL−1, depending on the compound, at a signal-to-noise ratio of 3. Recoveries obtained for spiked samples were satisfactory for all compounds. Levels of BPA were higher than those of BPS and the lowest contents were found for BP.
TL;DR: The methodology was successfully applied to determine the fatty acid composition of several edible oils, with equivalent results to those given by the AOAC Official method by gas chromatography.
Abstract: A simple methodology for the determination of the fatty acid composition of edible oils through (1)H NMR is proposed. The method is based on the fact that all fatty acid chains are esterified to a common moiety, glycerol, and the quantification is done directly in the (1)H NMR spectra through the relationship between the areas of a characteristic signal of each fatty acid and a signal of the glycerol moiety, without the use of mathematical equations. The methodology was successfully applied to determine the fatty acid composition of several edible oils, with equivalent results to those given by the AOAC Official method by gas chromatography. Its main advantages are simplicity and the lack of need for sample pre-treatment such as derivatization or extraction.
TL;DR: This labeling method is demonstrated to be not only effective in introducing an isotope tag for accurate metabolite quantification but also improving the chromatographic retention of the metabolites in reversed-phase (RP) LC, enhancing ESI efficiency by 2-4 orders of magnitude, and facilitating the identification of metabolite peaks in LC-MS.
Abstract: We have developed a new isotope labeling method, based on the use of isotope-coded p-dimethylaminophenacyl (DmPA) bromide as a reagent, combined with liquid chromatography−mass spectrometry (LC−MS) for high-performance metabolome analysis with a focus on profiling carboxylic acid-containing metabolites. Derivatization is simple, fast (1 h plus 30 min for quenching the reaction), and applicable to a wide range of carboxylic acids with a high yield and little or no side reaction products. This labeling method is demonstrated to be not only effective in introducing an isotope tag for accurate metabolite quantification but also improving the chromatographic retention of the metabolites in reversed-phase (RP) LC, enhancing ESI efficiency by 2−4 orders of magnitude, and facilitating the identification of metabolite peaks in LC−MS. In triplicate experiments of a 1:1 ratio of 13C-/12C-DmPA labeled human urine, we were able to detect 2671, 2546, and 2820 ion pairs from metabolites containing one or more carboxylic...
TL;DR: The recoveries obtained by using the proposed DLLME-GC-MS method evidenced the presence of matrix effects for some of the target analytes, and thereby the standard addition calibration method was employed.
TL;DR: The proposed method is an alternative approach to the quantification of volatile aldehyde biomarkers in complex biological samples, being more rapid and simpler and providing higher sensitivity compared with the traditional dispersive liquid-liquid microextraction (DLLME) methods.
TL;DR: A new, rapid, and reliable method for simultaneous quantification of 13C-labeled fatty acids in plasma using high-performance liquid chromatography-mass spectrometry (HPLC/MS).
TL;DR: Optimization of reaction conditions and matrix solution led to a complete and reproducible derivatization for all tested standard oligosaccharides, and the method was applied to trifucosyllacto-N-hexaose and tr ifucosyl-para-lacto, two isomers occurring in human breast milk samples, which were easily identified and distinguished.
Abstract: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is a widely used method in oligosaccharide analysis. Underivatized oligosaccharides are not well-suited for that purpose due to their low ionization efficiency; however, derivatization requires tedious sample purification steps which may lead to sample losses, thereby decreasing its benefit. On-target derivatization performed by the matrix 3-aminoquinoline does not require such purification and yields Schiff bases which can be measured in positive and negative ion mode from one single spot. In negative ion mode, spectra from anionic adducts of the derivatives can be acquired from 1 fmol of oligosaccharide. Furthermore, postsource decay (PSD) fragmentation in positive and negative ion mode is enhanced, providing information on oligosaccharide sequence, linkage, and branching. Optimization of reaction conditions and matrix solution led to a complete and reproducible derivatization for all tested standard oligosacchar...
TL;DR: The derivatization followed by LC-ESI-MS/MS enabled the detection of trace amounts of bile acids, gamma-CEHC and HVA in human saliva with a simple pretreatment, small sample volume and short analysis time.
TL;DR: The proposed method based on derivatization followed by LC-MS/MS provides a novel method to simultaneously monitor multiple groups of phenolic compounds in blood plasma.
TL;DR: A novel on-line HPLC-cupric reducing antioxidant capacity (CUPRAC) method was developed and successfully applied to the identification of antioxidant compounds in crude extracts of Camellia sinensis, Origanum marjorana and Mentha.
TL;DR: Cation-exchange chromatography is a pre-treatment procedure which should be widely useful for the determination of compound-specific nitrogen isotopic compositions of amino acids.
Abstract: We have established a procedure for removing interfering materials from extracts of geological and biological samples, in order to determine precise compound-specific nitrogen isotopic compositions of amino acids. We employed cation-exchange chromatography of protein and non-protein amino acids prior to derivatization for gas chromatographic separation. The average recovery of a standard amino acid solution was better than 94%, without nitrogen isotope fractionation during the cation-exchange chromatography. We applied the procedure to various environmental samples including 'hard' (calcareous, siliceous, rock and sediment samples) and 'soft' materials (aggregated microbial samples and biological soft tissue samples). We conclude that cation-exchange chromatography is a pre-treatment procedure which should be widely useful for the determination of compound-specific nitrogen isotopic compositions of amino acids.
TL;DR: A new hyphenated technique couples supercritical fluid extraction in situ derivatization and on-line headspace solid-phase microextraction to gas chromatography-mass spectrometry (SFE in situ derivedatization on- line HS-SPME-GC-MS) for the determination of paraben preservatives and polyphenolic antioxidants in cosmetics.
TL;DR: Although ultraviolet (UV) detection provides sufficient sensitivity for honey analysis, all the steps of the method were designed to be compatible with mass spectrometric detection.
TL;DR: A systemic mass spectrometry investigation of a novel strategy for labeling biological thiols, involving the cleavage of the Se-N bond by thiol to form a new Se-S bond, shows that the reaction is highly selective, rapid, reversible, and efficient.
Abstract: This paper reports a systemic mass spectrometry (MS) investigation of a novel strategy for labeling biological thiols, involving the cleavage of the Se−N bond by thiol to form a new Se−S bond. Our data show that the reaction is highly selective, rapid, reversible, and efficient. Among 20 amino acids, only cysteine is reactive toward Se−N containing reagents and the reaction occurs in seconds. With the addition of dithiothreitol, peptides derivatized by selenium reagents can be recovered. The high reaction selectivity and reversibility provide potential in both selective identification and isolation of thiols from mixtures. Also, with dependence on the selenium reagent used, derivatized peptide ions exhibit tunable dissociation behaviors (either facile cleavage or preservation of the formed Se−S bond upon collision-induced dissociation), a feature that is useful in proteomics studies. Equally importantly, the thiol derivatization yield is striking, as reflected by 100% conversion of protein β-lactoglobulin...
TL;DR: The derivatization process of the pristine nanotubes was a key factor to achieve a successful separation of both the light n-alkanes and related isomers and Satisfactory results were similarly obtained in the case of separation of aromatic hydrocarbons.
TL;DR: A simple sugaring-out assisted liquid-liquid extraction method combined with high-performance liquid-chromatography with fluorescence detection (HPLC-FL) was developed for the extraction and determination of sulfonamides in honey.
TL;DR: The novel methodology is based on the combination of organic acid-catalyzed esterification or etherification and photochemical thiol-ene click derivatization of a heterogeneous polysaccharide to allow for a highly modular and metal free surface modification of solidpolysaccharides.
Abstract: A simple and direct method for derivatization of solid polysaccharides is presented. The novel methodology is based on the combination of organic acid-catalyzed esterification or etherification and photochemical thiol-ene click derivatization of a heterogeneous polysaccharide. The solid cellulose was "organoclick" modified with aryl, alkyl and polyester groups, respectively. The modification allows for a highly modular and metal free surface modification of solid polysaccharides.
TL;DR: In this article, a new derivatization reagent, 4-(2-((4-bromophenethyl)dimethylammonio)ethoxy)benzenaminium dibromide (4-APEBA), was designed with additional features for the analysis and screening of biomarkers of lipid peroxidation.
Abstract: Based on the template of a recently introduced derivatization reagent for aldehydes, 4-(2-(trimethylammonio)ethoxy)benzeneaminium dibromide (4-APC), a new derivatization agent was designed with additional features for the analysis and screening of biomarkers of lipid peroxidation. The new derivatization reagent, 4-(2-((4-bromophenethyl)dimethylammonio)ethoxy)benzenaminium dibromide (4-APEBA) contains a bromophenethyl group to incorporate an isotopic signature to the derivatives and to add additional fragmentation identifiers, collectively enhancing the abilities for detection and screening of unknown aldehydes. Derivatization can be achieved under mild conditions (pH 5.7, 10 degrees C). By changing the secondary reagent (1-ethyl-3-(3-dimethylaminopropyl) carbodiimide instead of sodium cyanoborohydride), 4-APEBA is also applicable to the selective derivatization of carboxylic acids. Synthesis of the new label, exploration of the derivatization conditions, characterization of the fragmentation of the aldehyde and carboxylic acid derivatives in MS/MS, and preliminary applications of the labeling strategy for the analysis of aldehydes in urine and plasma are described.
TL;DR: Iodination of arene-containing natural products employing N-iodosuccinimide catalyzed by In(OTf)(3) at ambient temperature is reported as a versatile and mild method for natural product derivatization amenable to small scale.
TL;DR: Compared with SPME and SPE, the proposed method can be successfully applied to the rapid and convenient determination of NP and OP in aqueous samples.
TL;DR: It was found that no soybean cultivar by location interaction was significant for any of the amino acids which demonstrate that amino acid compositions were generally stable across a range of environments, and that the repeatability of the measurement itself was high.
Abstract: Breeding efforts to change the amino acid profile of seed protein and the assessment of genetic variation for amino acid composition among soybean germplasm resources have been hampered by lack of a rapid and inexpensive method for amino acid determination. A modified procedure presented here is partly based on a gas-phase hydrolysis and precolumn derivatization for HPLC analysis. The procedure accurately measured cysteine and half-cystine in samples. The method was also proven to be accurate using a reference protein with known amino acid composition. It is reliable and can be automated for daily analysis with a large number of samples. The method was also tested with soybean seeds harvested from a two-replicate multi-location soybean field experiment. It was found that no soybean cultivar by location interaction was significant for any of the amino acids which demonstrate that amino acid compositions were generally stable across a range of environments, and that the repeatability of the measurement itself was high. The error associated with the determination was also low as demonstrated by the analysis of variance.
TL;DR: Chen et al. as mentioned in this paper reported an improved method that employs modified phenylboronic acids including 3-nitrophenylbornic acid and N-methyl-4-pyridineboronic acid iodide.
TL;DR: A simple and automated high performance liquid chromatography method for the separation and quantitative determination of gamma-glutamylcysteine and reduced glutathione (GSH) in wines is reported and has been validated for linearity, LOD, LOQ, precision and accuracy.
TL;DR: The procedure, utilizing the novel approach of direct “on spot” derivatization followed by analysis with GC-MS, proved to be reliable, fast, and applicable in routine toxicology.
Abstract: The objective of this study was the development of an accurate and sensitive method for the determination of gamma-hydroxybutyric acid (GHB) in dried whole blood samples using a GC-MS method. The complete procedure was optimized, with special attention on the sample pretreatment, and validated. Therefore, dried blood spots of only 50 μl were prepared and, after the addition of internal standard GHB-d6, directly derivatized using 100 μl of a freshly prepared mixture of trifluoroacetic acid anhydride and heptafluorobutanol (2:1). The derivatized extract was injected into a gas chromatograph coupled to a mass spectrometer (GC-MS), operating in the electron impact mode, with a total run time of 12.3 min. Method validation included the evaluation of linearity, precision, accuracy, sensitivity, selectivity, and stability. A weighting factor of 1/x2 was chosen and acceptable intra-batch precision, inter-batch precision, and accuracy were seen. The linear calibration curve ranged from 2 to 100 μg/ml, with a limit of detection of 1 μg/ml. Our procedure, utilizing the novel approach of direct “on spot” derivatization followed by analysis with GC-MS, proved to be reliable, fast, and applicable in routine toxicology.
TL;DR: A method for simultaneous determination of sterols and fatty alcohols in olive leaves and drupes based on ultrasound-assisted extraction and derivatization prior to individual identification-quantitation by chromatographic separation and mass spectrometry detection (single ion monitoring mode) is reported here.
TL;DR: A rapid microscale method for determination of amino acid profiles from minute amounts of plant samples was developed that allowed the eluent to be derivatized directly with methyl chloroformate without sample lyophilization or other evaporation procedures.
TL;DR: Removing serum proteins by precipitation before derivatization and performing the reaction at neutral pH enabled the determination of accurate free AA enantiomer concentrations, and accuracy of quantification was validated by an established nonchiral GC-MS method for AA analysis.
TL;DR: The origins and identity of WS phosphoproteome suggest significant implications for both basic science and the development of novel biomarkers/diagnostic tools for systemic and oral disease states.