Cloud computing

Abstract: Contact mapping experiments such as Hi-C explore how genomes fold in 3D. Here, we introduce Juicebox.js, a cloud-based web application for exploring the resulting datasets. Like the original Juicebox application, Juicebox.js allows users to zoom in and out of such datasets using an interface similar to Google Earth. Juicebox.js also has many features designed to facilitate data reproducibility and sharing. Furthermore, Juicebox.js encodes the exact state of the browser in a shareable URL. Creating a public browser for a new Hi-C dataset does not require coding and can be accomplished in under a minute. The web app also makes it possible to create interactive figures online that can complement or replace ordinary journal figures. When combined with Juicer, this makes the entire process of data analysis transparent, insofar as every step from raw reads to published figure is publicly available as open source code.

Abstract: The increasing tendency of network service users to use cloud computing encourages web service vendors to supply services that have different functional and nonfunctional (quality of service) features and provide them in a service pool. Based on supply and demand rules and because of the exuberant growth of the services that are offered, cloud service brokers face tough competition against each other in providing quality of service enhancements. Such competition leads to a difficult and complicated process to provide simple service selection and composition in supplying composite services in the cloud, which should be considered an NP-hard problem. How to select appropriate services from the service pool, overcome composition restrictions, determine the importance of different quality of service parameters, focus on the dynamic characteristics of the problem, and address rapid changes in the properties of the services and network appear to be among the most important issues that must be investigated and addressed. In this paper, utilizing a systematic literature review, important questions that can be raised about the research performed in addressing the above-mentioned problem have been extracted and put forth. Then, by dividing the research into four main groups based on the problem-solving approaches and identifying the investigated quality of service parameters, intended objectives, and developing environments, beneficial results and statistics are obtained that can contribute to future research.

Abstract: MapReduce has been widely used for large-scale data analysis in the Cloud. The system is well recognized for its elastic scalability and fine-grained fault tolerance although its performance has been noted to be suboptimal in the database context. According to a recent study [19], Hadoop, an open source implementation of MapReduce, is slower than two state-of-the-art parallel database systems in performing a variety of analytical tasks by a factor of 3.1 to 6.5. MapReduce can achieve better performance with the allocation of more compute nodes from the cloud to speed up computation; however, this approach of "renting more nodes" is not cost effective in a pay-as-you-go environment. Users desire an economical elastically scalable data processing system, and therefore, are interested in whether MapReduce can offer both elastic scalability and efficiency.In this paper, we conduct a performance study of MapReduce (Hadoop) on a 100-node cluster of Amazon EC2 with various levels of parallelism. We identify five design factors that affect the performance of Hadoop, and investigate alternative but known methods for each factor. We show that by carefully tuning these factors, the overall performance of Hadoop can be improved by a factor of 2.5 to 3.5 for the same benchmark used in [19], and is thus more comparable to that of parallel database systems. Our results show that it is therefore possible to build a cloud data processing system that is both elastically scalable and efficient.

Abstract: This review focuses on the use of Web 2.0 tools in Higher Education. It provides a synthesis of the research literature in the field and a series of illustrative examples of how these tools are being used in learning and teaching. It draws out the perceived benefits that these new technologies appear to offer, and highlights some of the challenges and issues surrounding their use. The review forms the basis for a HE Academy funded project, ‘Peals in the Cloud’, which is exploring how Web 2.0 tools can be used to support evidence-based practices in learning and teaching. The project has also produced two in-depth case studies, which are reported elsewhere (Galley et al., 2010, Alevizou et al., 2010). The case studies focus on evaluation of a recently developed site for learning and teaching, Cloudworks, which harnesses Web 2.0 functionality to facilitate the sharing and discussion of educational practice. The case studies aim to explore to what extent the Web 2.0 affordances of the site are successfully promoting the sharing of ideas, as well as scholarly reflections, on learning and teaching.