About: CIRBP is a research topic. Over the lifetime, 97 publications have been published within this topic receiving 2672 citations. The topic is also known as: CIRP & cold inducible RNA binding protein.
TL;DR: A de novo transcriptome is assembled and annotated using RNA-sequencing profiles for a broad spectrum of tissues that is estimated to have near-complete sequence information for 88% of axolotl genes and finds evidence that cirbp plays a cytoprotective role during limb regeneration whereas manipulation of kazald1 expression disrupts regeneration.
TL;DR: Cellular and molecular biology of mammalian cells at 32 degrees C is a new area expected to have considerable implications for medical sciences and possibly biotechnology.
Abstract: Compared to bacteria and plants, the cold shock response has attracted little attention in mammals except in some areas such as adaptive thermogenesis, cold tolerance, storage of cells and organs, and recently, treatment of brain damage and protein production. At the cellular level, some responses of mammalian cells are similar to microorganisms; cold stress changes the lipid composition of cellular membranes, and suppresses the rate of protein synthesis and cell proliferation. Although previous studies have mostly dealt with temperatures below 20°C, mild hypothermia (32°C) can change the cell’s response to subsequent stresses as exemplified by APG-1, a member of the HSP110 family. Furthermore, 32°C induces expression of CIRP (cold-inducible RNAbinding protein), the first cold shock protein identified in mammalian cells, without recovery at 37°C. Remniscent of HSP, CIRP is also expressed at 37°C and developmentary regulated, possibly working as an RNA chaperone. Mammalian cells are metabolically active at 32°C, and cells may survive and respond to stresses with different strategies from those at 37°C. Cellular and molecular biology of mammalian cells at 32°C is a new area expected to have considerable implications for medical sciences and possibly biotechnology.
TL;DR: RBM3 and CIRP are adaptatively expressed in response to hypoxia by a mechanism that involves neither HIF-1 nor mitochondria, which suggests that regulation takes place at the level of gene transcription.
Abstract: The transcriptional regulation of several dozen genes in response to low oxygen tension is mediated by hypoxia-inducible factor 1 (HIF-1), a heterodimeric protein composed of two subunits, HIF-1alpha and HIF-1beta. In the HIF-1alpha-deficient human leukemic cell line, Z-33, exposed to mild (8% O(2)) or severe (1% O(2)) hypoxia, we found significant upregulation of two related heterogenous nuclear ribonucleoproteins, RNA-binding motif protein 3 (RBM3) and cold inducible RNA-binding protein (CIRP), which are highly conserved cold stress proteins with RNA-binding properties. Hypoxia also induced upregulation of RBM3 and CIRP in the murine HIF-1beta-deficient cell line, Hepa-1 c4. In various HIF-1 competent cells, RBM3 and CIRP were induced by moderate hypothermia (32 degrees C) but hypothermia was ineffective in increasing HIF-1alpha or vascular endothelial growth factor (VEGF), a known HIF-1 target. In contrast, iron chelators induced VEGF but not RBM3 or CIRP. The RBM3 and CIRP mRNA increase after hypoxia was inhibited by actinomycin-D, and in vitro nuclear run-on assays demonstrated specific increases in RBM3 and CIRP mRNA after hypoxia, which suggests that regulation takes place at the level of gene transcription. Hypoxia-induced RBM3 or CIRP transcription was inhibited by the respiratory chain inhibitors NaN(3) and cyanide in a dose-dependent fashion. However, cells depleted of mitochondria were still able to upregulate RBM3 and CIRP in response to hypoxia. Thus, RBM3 and CIRP are adaptatively expressed in response to hypoxia by a mechanism that involves neither HIF-1 nor mitochondria.
TL;DR: RBM3, another member of the GRP family, is induced in human cells in response to cold stress (32 degrees C), suggesting that RBM3 and CIRP play distinct roles in cold responses of human cells.
TL;DR: Analysis of the transcriptome following infection by dengue virus, Zika virus, West Nile virus, and hepatitis C virus found that infection by these viruses alters m6A modification of specific cellular transcripts, including RIOK3 and CIRBP.