TL;DR: The molecular characterization of a lentivirus (SIVdeb) naturally infecting De Brazza's monkeys and the consistent clustering of SIVdeb with SIVsyk and the SIVmon/Sivmus/SIVgsn group suggests that these viruses have evolved from a common ancestor that likely infected a Cercopithecus host in the distant past.
Abstract: Nearly complete sequences of simian immunodeficiency viruses (SIVs) infecting 18 different nonhuman primate species in sub-Saharan Africa have now been reported; yet, our understanding of the origins, evolutionary history, and geographic distribution of these viruses still remains fragmentary. Here, we report the molecular characterization of a lentivirus (SIVdeb) naturally infecting De Brazza's monkeys (Cercopithecus neglectus). Complete SIVdeb genomes (9,158 and 9,227 bp in length) were amplified from uncultured blood mononuclear cell DNA of two wild-caught De Brazza's monkeys from Cameroon. In addition, partial pol sequences (650 bp) were amplified from four offspring of De Brazza's monkeys originally caught in the wild in Uganda. Full-length (9,068 bp) and partial pol (650 bp) SIVsyk sequences were also amplified from Sykes's monkeys (Cercopithecus albogularis) from Kenya. Analysis of these sequences identified a new SIV clade (SIVdeb), which differed from previously characterized SIVs at 40 to 50% of sites in Pol protein sequences. The viruses most closely related to SIVdeb were SIVsyk and members of the SIVgsn/SIVmus/SIVmon group of viruses infecting greater spot-nosed monkeys (Cercopithecus nictitans), mustached monkeys (Cercopithecus cephus), and mona monkeys (Cercopithecus mona), respectively. In phylogenetic trees of concatenated protein sequences, SIVdeb, SIVsyk, and SIVgsn/SIVmus/SIVmon clustered together, and this relationship was highly significant in all major coding regions. Members of this virus group also shared the same number of cysteine residues in their extracellular envelope glycoprotein and a high-affinity AIP1 binding site (YPD/SL) in their p6 Gag protein, as well as a unique transactivation response element in their viral long terminal repeat; however, SIVdeb and SIVsyk, unlike SIVgsn, SIVmon, and SIVmus, did not encode a vpu gene. These data indicate that De Brazza's monkeys are naturally infected with SIVdeb, that this infection is prevalent in different areas of the species' habitat, and that geographically diverse SIVdeb strains cluster in a single virus group. The consistent clustering of SIVdeb with SIVsyk and the SIVmon/SIVmus/SIVgsn group also suggests that these viruses have evolved from a common ancestor that likely infected a Cercopithecus host in the distant past. The vpu gene appears to have been acquired by a subset of these Cercopithecus viruses after the divergence of SIVdeb and SIVsyk.
TL;DR: The presence of new viruses closely related to SIVgsn in two other species reinforces the hypothesis that a recombination event between ancestral SIVs from the family Cercopithecinae is the origin of the present SIVcpz that is widespread among the chimpanzee population.
Abstract: During a large serosurvey of wild-caught primates from Cameroon, we found 2 mona monkeys (Cercopithecus mona) out of 8 and 47 mustached monkeys (Cercopithecus cephus) out of 302 with human immunodeficiency virus (HIV)-simian immunodeficiency virus (SIV) cross-reactive antibodies. In this report, we describe the full-length genome sequences of two novel SIVs, designated SIVmon-99CMCML1 and SIVmus-01CM1085, isolated from one mona (CML1) and one mustached (1085) monkey, respectively. Interestingly, these viruses displayed the same genetic organization (i.e., presence of a vpu homologue) as members of the SIVcpz-HIV type 1 lineage and SIVgsn isolated from greater spot-nosed monkeys (Cercopithecus nictitans). Phylogenetic analyses of SIVmon and SIVmus revealed that these viruses were genetically distinct from other known primate lentiviruses but were more closely related to SIVgsn all across their genomes, thus forming a monophyletic lineage within the primate lentivirus family, which we designated the SIVgsn lineage. Interestingly, mona, mustached, and greater spot-nosed monkeys are phylogenetically related species belonging to three different groups of the genus Cercopithecus, the C. mona, C. cephus, and Cercopithecus mitis groups, respectively. The presence of new viruses closely related to SIVgsn in two other species reinforces the hypothesis that a recombination event between ancestral SIVs from the family Cercopithecinae is the origin of the present SIVcpz that is widespread among the chimpanzee population.
TL;DR: Odzala National Park, Republic of the Congo has the highest recorded densities of western lowland gorilla and chimpanzee in Central Africa and may be a result of the high productivity of the forest and low poaching pressure.
Abstract: A survey of diurnal primate populations was carried out in Odzala National Park, Republic of the Congo, over 3 months in 1994 and 2 months in 1995. The park contains a high diversity and species-specific abundance of primates, and has the highest number of diurnal primates (10 species) in the forest block of Central Africa. Eight species of monkey: greater whitenosed monkey Cercopithecus nictitans, moustached monkey Cercopithecus cephus, crowned guenon Cercopithecus pogonias, De Brazza's monkey Cercopithecus neglectus, talapoin Miopithecus talapoin, white-cheeked mangabey Cercocebus albigena, agile mangabey Cercocebus galeritus and guereza Colobus guereza, as well as gorilla Gorilla g. gorilla and chimpanzee Pan t. troglodytes were sighted in the survey. Monkey species richness was highest in dense inundated forest and thicket, with all eight species occurring in these habitats, whereas only four species were found in terra firma forest (consisting of the park's two main habitats, open-canopy Marantaceae forest and closed-canopy primary forest). Three of the four species (C. nictitans, C. cephus and C. albigena) present in terra firma forest were most abundant in closed-canopy primary forest (1.4,1.0 and 0.6 groups per km, respectively) while the fourth (C. pogonias) was most abundant in open-canopy Marantaceae forest. Gorilla nests were most abundant in open-canopy Marantaceae forest (12.1 nests per km), while chimpanzee nests were mostly found in closed-canopy primary forest and Marantaceae forest (14 and 12 nests per km, respectively). Odzala has the highest recorded densities of western lowland gorilla (mean = 5.4 individuals per sq km) and chimpanzee (mean = 2.2 individuals per sq km) in Central Africa. The high densities of gorillas and chimpanzees may be a result of the high productivity of the forest and low poaching pressure. Conservation measures to ensure the maintenance of conditions in the area, such as educational programmes, are suggested.
TL;DR: The aim was to search for a simian HTLV-4-related virus and to document and characterize further the diversity of STLV infections in wild primate populations, and it is shown for the first time that Lophocebus albigena and Cercopithecus cephus carry both STLV-1 and a divergent ST LV-3.
TL;DR: A survey of primate populations was carried out during a 7-month period in 1994 and the results showed that there is a high primate diversity (15-16 distinct species) in Monte Alen.
Abstract: Equatorial Guinea has a new network of protected areas, but only Monte Alen National Park has any effective protection. As a contribution to the knowledge of this area, a survey of primate populations was carried out during a 7-month period in 1994. The results showed that there is a high primate diversity (15–16 distinct species) in Monte Alen. The three most commonly sighted monkey species were Cercopithecus nictitans (35.9–40.8 per cent of sightings), Cercopithecus cephus (28.9–43.5 per cent) and Cercopithecus pogonias (17.4–22.4 per cent). Mean distance covered to find any group of these guenons varied from 1.1km in open primary forest to 2.7 km in dense primary forest. Gorilla nests were more abundant in secondary forest near villages (5.15 nests/km), while chimpanzee nests were mostly found in primary forest (5.35 nests/km). Hunting pressure appears to be low but shifting agriculture has a significant impact on the conservation of the area. The degree of threat varies between species. Alternatives for better management of the area, such as educational programmes and sustainable use of natural resources, are suggested.