Abstract: Dietary supplementation of yeast or yeast subcomponents (YYS) as commercial preparations of β-glucan (MacroGard®; Biotec-Mackzymal, Tromso, Norway; and Betagard A®; Aqua-In-Tech, Inc., Seattle, WA, USA), mannan oligosaccharide (Bio-Mos™ Aqua Grade; Alltech, Nicholasville, KY, USA), or whole-cell Saccharomyces cerevisiae (Levucell SB20®; Lallemand Animal Nutrition, Milwaukee, WI, USA) at the manufacturer’s recommended levels was evaluated on the physiological performance of juvenile channel catfish, Ictalurus punctatus. Fish were fed YYS diets for 4 wk, followed by 2 wk of control diet. Fish were sampled at the end of each feeding period (4 and 6 wk) to measure hematological and immune parameters and growth and to determine the effects of dietary β-glucan on resistance to Edwardsiella ictaluri infection and to low-water stress (6 wk). Supplementation of YYS in diets did not affect growth performance, hematology, or immune function. Survival from E. ictaluri infection was from 5 to 17.5% higher in fish fed YYS diets than in the control group, but the increases were not significant. Some improvement in stress resistance was observed in YYS-fed catfish after exposure to low-water stress. Stress reduction in fish fed diets supplemented with yeast subcomponents has been reported previously, but thus far, no explanation has been proposed for this effect. The present study and the previously published research suggest that dietary YYS supplementation does not appear to improve resistance of channel catfish to E. ictaluri.

Abstract: This dataset contains the digitized treatments in Plazi based on the original journal article Cesar A. Castellanos-Morales (2007): Trichomycterus santanderensis: A new species of troglomorphic catfish (Siluriformes, Trichomycteridae) from Colombia. Zootaxa 1541: 49-55, URL: http://www.zoobank.org/urn:lsid:zoobank.org:pub:C484016C-5884-4D3F-A04D-B62251FF4586

Abstract: This dataset contains the digitized treatments in Plazi based on the original journal article Heok Hee Ng, Heok Hui Tan (2007): Pseudecheneis maurus, a new species of glyptosternine catfish (Teleostei: Sisoridae) from Central Vietnam. Zootaxa 1406: 25-32, URL: http://www.zoobank.org/urn:lsid:zoobank.org:pub:EC50E44D-9698-4C65-ADFB-6868AE486DFD

Abstract: The reference intervals for biochemical variables and red blood cell indices of healthy intensively bred channel catfish Ictalurus punctatus were determined. The blood variables were determined using standardized clinical methods. The reference intervals (25th and 75th percentiles) were established using a non-parametric method. Reference intervals for plasma glucose, serum total protein, sodium, potassium, calcium, magnesium, chloride concentration, primary and secondary red blood cell indices were established. The haematological and biochemical reference intervals established may allow important clinical decisions about channel catfish.

Abstract: A feeding trial was undertaken to evaluate compensatory growth in channel catfish and to chronicle the changes in body condition associated with the imposed feeding strategy. Four 1200-L circular tanks were each stocked with approximately 600 fingerling channel catfish (mean initial weight 32 g). Two tanks represented control fish which were fed to apparent satiation once daily throughout the trial. The two remaining tanks of fish were unfed for 4 wk and subsequently refed daily to apparent satiation for the following 10 wk in order to elicit a compensatory growth response. Fish fed to apparent satiation during the first 4 wk of the trial had a 41% increase in body weight, while the fasted fish decreased in weight by 20%. During the subsequent refeeding period, previously unfed fish were not able to increase growth rates sufficiently to overcome weight loss imposed by the 4-wk feed restriction. However, after 8 wk of refeeding, total increase in body weight of the previously unfed fish was 179 % of initial weight and similar to that of control fish which gained 231 % of initial weight. Hepatosomatic index (HSI) and condition factor decreased rapidly during the fasting period and increased rapidly to control levels during subsequent refeeding. The intraperitoneal fat (1PF) ratio and muscle ratio responded more slowly to feed restriction with IPF ratio decreasing consistently after 2 wk feed restriction. Muscle ratio showed little effect from the 4-wk period of feed deprivation. It appears that not feeding channel catfish fingerlings for 4 wk is too long to induce a compensatory growth response that is optimal for aquaculture; however, HSI may be the index of choice for detecting when refeeding should begin to maximize compensatory growth.

Abstract: Summary Gutted European catfish (Silurus glanis) from warm-water aquaculture was stored in ice for 30 days. The limit of saleability was reached after approximately 20 days, and cooked fillets became inedible after about 27 days. Quality changes were investigated using established analytical methods; pH, total volatile bases (TVB), thiobarbituric acid number and texture measurements by Instron were not usefully predictive of shelf-life or possible storage time. The Fish Tester and Torrymeter values decreased from 848 to 376 and 111 to 61, respectively. On day 27 the total aerobic bacterial counts had reached some 108/cm2 skin surface but only 105/g muscle. Hypoxanthine concentrations increased steadily to 17.2 mg/100 g, and ammonia levels increased from 11.5 to 18.7 mg/100 g muscle. There were no differences in the patterns obtained by isoelectric focusing of sarcoplasmic proteins from fresh and spoiled European catfish.

Abstract: Knowledge of the movements and diel behaviour of the European catfish (Silurus glanis), the largest European freshwater fish, is limited to anecdotal information. In a preliminary telemetry study of European catfish, the spring diel movement patterns of five adult catfish were examined. After intraperitoneal insertion of the acoustic tags, the positions of the fish were recorded automatically in the Flix Reservoir (River Ebro, NE Spain). A marked nocturnal mobility pattern was observed throughout the study. During daytime, the catfish were consistently located in the littoral zone and spent extended periods of the day hidden in concealed habitats. Catfish movements were in a radial pattern, with upstream and downstream excursions followed by returns to a previously occupied location. Significant individual variations in movement pattern were observed among the tagged fish and within the 24 h cycle for each fish. Mean instantaneous swimming speed was 0.17 body lengths per second (BLAEs)1) at night but 0.09 BLAEs)1 during the daytime

Abstract: To address the roles of doublesex and mab-3-related transcription factor 1 (Dmrt1), forkhead transcription factor gene 2 (Foxl2), and aromatase in sex differentiation of Southern catfish, the cDNA sequences of these genes were isolated from the gonads. Dmrt1a and Dmrt1b were found to be expressed in the gonads, being higher in the testis. A low expression level of Dmrt1b was also detected in the intestine and kidney of the male. Foxl2 was found to be expressed extensively in the brain (B), pituitary (P), gill and gonads (G), with the highest level in the ovary, indicating the possible involvement of Foxl2 in the B-P-G axis. Cytochrome P450 (Cyp)19b was found to be expressed in the brain, spleen, and gonads, while Cyp19a was only expressed in the gonads and spleen. All-female Southern catfish fry were treated with fadrozole (F), tamoxifen (TAM), and 17beta-estradiol (E2) respectively, from 5 to 25 days after hatching (dah). The expression levels of these genes were measured at 65 dah. In the F-, TAM-, and FTAM-treated groups, Dmrt1a and Dmrt1b were up-regulated in the gonad, whereas Foxl2 and Cyp19a were down-regulated, while the expression of Cyp19b in the gonad remained unchanged. Furthermore, down-regulation of Foxl2 and Cyp19b was also detected in the brain. In the E2-treated group, Dmrt1a and Dmrt1b were down-regulated to an undetectable level in the gonad, whereas Foxl2 and Cyp19b were up-regulated in the brain. Consistent with the observed changes in the expressions of these genes, 56, 70, and 80% sex-reversed male individuals were obtained in the F-, TAM-, and F + TAM-treated groups respectively. These results indicate the significant roles of Dmrt1, Foxl2, and Cyp19 in the sex differentiation of Southern catfish.

Abstract: Two CD4-like (CD4L) molecules have been identified in channel catfish, Ictalurus punctatus. Although phylogenetically related to other vertebrate CD4 molecules, they exhibit only 19% amino acid identity to each other. IpCD4L-1 encodes a predicted protein containing four immunoglobulin domains, a transmembrane region and a cytoplasmic tail containing a p56lck binding site. In contrast, IpCD4L-2 encodes for a similar protein with three immunoglobulin domains. The gene organization of IpCD4L-1 is very similar to that of other vertebrate CD4 genes, while the genomic organization of IpCD4L-2 is different. Southern blots indicate both catfish molecules are likely single copy genes and mapping studies show that both are found on a single Bacterial Artificial Chromosome suggesting close linkage. At the message level, IpCD4L-1 and -2 are expressed in various catfish lymphoid tissues and in non-B-cell peripheral blood leukocytes (PBL). Both messages are upregulated in concanavalin A (ConA) and alloantigen stimulated PBL, but not in lipopolysaccharide (LPS)-stimulated cultures. In contrast, they are differentially expressed among the catfish clonal T cell lines. While both molecules appear to be T cell specific, their functional significance in catfish is unknown.

Abstract: The effects of elevated dietary arginine on the hematology and immune function of juvenile channel catfish Ictalurus punctatus were evaluated by means of in vivo and in vitro experiments. Healthy juvenile channel catfish (average weight, 34.8 g) were fed casein–gelatin-based diets containing 28% crude protein and supplemented with crystalline l-arginine (ARG) at 0.5, 1, 2, or 4% of diet. An intact-protein diet containing 1.3% arginine also was included to investigate the effects of amino acid form (crystalline-free amino acids versus intact protein). Each purified diet was fed to apparent satiation to triplicate groups of fish for 6 weeks. At the end of the experimental feeding period, the fish were injected intraperitoneally with two doses (3 d apart) of 2 mg lipopolysaccharide/kg body weight. Six days after the initial injection, the fish were anesthetized and tissue samples were obtained to evaluate hematological and humoral and cellular immune parameters, including phagocytic activity of peri...

Abstract: EST sequencing is one of the most efficient means for gene discovery and molecular marker development, and can be additionally utilized in both comparative genome analysis and evaluation of gene duplications. While much progress has been made in catfish genomics, large-scale EST resources have been lacking. The objectives of this project were to construct primary cDNA libraries, to conduct initial EST sequencing to generate catfish EST resources, and to obtain baseline information about highly expressed genes in various catfish organs to provide a guide for the production of normalized and subtracted cDNA libraries for large-scale transcriptome analysis in catfish. A total of 17 cDNA libraries were constructed including 12 from channel catfish (Ictalurus punctatus) and 5 from blue catfish (I. furcatus). A total of 31,215 ESTs, with average length of 778 bp, were generated including 20,451 from the channel catfish and 10,764 from blue catfish. Cluster analysis indicated that 73% of channel catfish and 67% of blue catfish ESTs were unique within the project. Over 53% and 50% of the channel catfish and blue catfish ESTs, respectively, had significant similarities to known genes. All ESTs have been deposited in GenBank. Evaluation of the catfish EST resources demonstrated their potential for molecular marker development, comparative genome analysis, and evaluation of ancient and recent gene duplications. Subtraction of abundantly expressed genes in a variety of catfish tissues, identified here, will allow the production of low-redundancy libraries for in-depth sequencing. The sequencing of 31,215 ESTs from channel catfish and blue catfish has significantly increased the EST resources in catfish. The EST resources should provide the potential for microarray development, polymorphic marker identification, mapping, and comparative genome analysis.

Abstract: The effect of sublethal hypoxia exposure on stress and immune responses and susceptibility to Edwardsiella ictaluri infection in juvenile channel catfish, Ictalurus punctatus, was investigated. Fish were monitored for temporal changes in glucose and cortisol concentrations before, during, and after 2 h exposure to sublethal hypoxia (<2 mg/L dissolved oxygen [DO]) and when maintained under normoxic conditions (6.0 ± 0.3 mg/L DO). Both blood glucose and plasma cortisol increased significantly in response to hypoxic conditions. Fish exposed to hypoxic or normoxic conditions were challenged with a high dose (1.3 × 107 colony-forming units [CFU]/mL) or a low dose (1.3 × 105 CFU/mL) of E. ictaluri or sterile culture broth by 30-min immersion bath. Approximately 1% of fish in both the normoxic and the hypoxic groups died when challenged with the low dose of E. ictaluri. However, when challenged with the high dose of E. ictaluri, catfish exposed to hypoxic conditions had significantly higher cumulative mortality (36 ± 12.1%) than those maintained under normoxic conditions (12 ± 1.1%). Total hemolytic complement and bactericidal activities and antibody response were lower in hypoxia-exposed channel catfish, indicating that increased susceptibility of channel catfish to E. ictaluri may be the result of the immunosuppressive effects of the stress response to hypoxia.

Abstract: Channel catfish, Ictalurus punctatus, is the leading species in North American aquaculture. Genetic improvement of catfish is performed through selective breeding, and genomic tools will help improve selection efficiency. A physical map is needed to integrate the genetic map with the karyotype and to support fine mapping of phenotypic trait alleles such as Quantitative Trait Loci (QTL) and the effective positional cloning of genes. A genome-wide physical map of the channel catfish was constructed by High-Information-Content Fingerprinting (HICF) of 46,548 Bacterial Artificial Chromosomes (BAC) clones using the SNaPshot technique. The clones were assembled into contigs with FPC software. The resulting assembly contained 1,782 contigs and covered an estimated physical length of 0.93 Gb. The validity of the assembly was demonstrated by 1) anchoring 19 of the largest contigs to the microsatellite linkage map 2) comparing the assembly of a multi-gene family to Restriction Fragment Length Polymorphism (RFLP) patterns seen in Southern blots, and 3) contig sequencing. This is the first physical map for channel catfish. The HICF technique allowed the project to be finished with a limited amount of human resource in a high throughput manner. This physical map will greatly facilitate the detailed study of many different genomic regions in channel catfish, and the positional cloning of genes controlling economically important production traits.

Abstract: Biochemical investigations were carried out to assess the effect of consumption of crude oil contaminated catfish on the hepatocytes and performance of rat. Catfish (Clarias gariepinus) (n = 120) were grouped into 6 of 20 catfish each and held for 30 h in 5 different mixtures of crude oil polluted water (0.1, 0.25, 0.5, 0.75 and 1% v/v). Catfish in the control group were held in borehole water. At the expiration of 30 h, the catfish were harvested and used to formulate diet. Albino rats (n = 60) were grouped into 6 of 10 rats each and fed on the formulated diet for a period of 30 days. Compared with the control, the result showed no significant difference (p>0.05) in the average daily feed intake in all the groups of rats. However, a significant reduction (p<0.05) was observed in the overall body weight, the liver-to-body weight ratio as well as the serum concentrations of albumin and globulin of rat as the amount of crude oil in the diet increased. A significant increase (p<0.05) was also observed in the serum bilirubin concentration of rats fed on diet formulated with crude oil contaminated catfish when compared with the control. Histological analysis also revealed that the architectural arrangement of the liver was altered following the consumption of diet containing catfish exposed to crude oil polluted water. Overall, the data obtained indicate a possible adverse effect on the performance and impaired liver function in the rats fed on diet containing catfish exposed to crude oil polluted water. Key words: Crude oil, hepatocytes, catfish, albumin, globulin, bilirubin.

Abstract: Changes in the quality of hot smoked catfish were determined just after smoking and during refrigerated storage. Chemical, sensory and microbiological analyses of the samples were carried out during the storage to test their shelf life and quality. Total viable count, total volatile basic nitrogen, peroxide values and thiobarbituric acid values increased, while sensory scores decreased during storage. The pH values were slightly increased by storage time. It was found that hot smoked catfish samples were unfit for human consumption at day 24 according to microbiological and sensory analyses. PRACTICAL APPLICATIONS Results of this study can be applied to improve the existing methods of catfish processing. The findings exemplify the storage ability of hot smoked catfish for a period of as long as 24 days under refrigerated storage. These findings can be well utilized by researchers as well as manufacturers in the economic preparation of hot smoked fish products and for long-term storage. Based on these results, suitable methods of preservation and packaging techniques can be developed for improving the shelf life of hot smoked catfish.

Abstract: A study was conducted to evaluate effects of various carotenoids on skin and fillet coloration and fillet carotenoid concentration in channel catfish, Ictalurus punctatus. For 12 wk, juvenile catfish were fed one of six experimental diets containing no supplemental carotenoid or 100 mg/kg of one of following carotenoid additions: β-carotene (BCA), lutein (LUT), zeaxanthin (ZEA), canthaxanthin (CAN), and astaxanthin (AST). Visual yellow color intensity score was highest for fish fed LUT, followed by ZEA, AST, and CAN, and lowest for fish fed basal and BCA diets. Skin and tissue Commission Internationale de I’Eclairage yellowness value was the highest in fish fed LUT, followed by fish fed ZEA, AST, and CAN, and lowest for fish fed basal and BCA diets. Fish accumulated the supplemental carotenoids in muscle tissues, but concentrations of different carotenoids in the tissue varied greatly. Approximately 30% of the LUT added was converted to echineone; no conversion was observed among other supplemental carotenoids. Results from the present study indicate that channel catfish can accumulate yellow pigments LUT and ZEA and red or pink pigments CAN and AST in the flesh, resulting in yellow coloration. The yellow pigment BCA does not appear to deposit in skin or flesh at levels sufficient to alter the coloration.

Abstract: Edwardsiella ictaluri is the leading cause of mortality in channel catfish culture, but little is known about its pathogenesis. The use of signature-tagged mutagenesis in a waterborne infection model resulted in the identification of 50 mutants that were unable to infect/survive in catfish. Nineteen had minitransposon insertions in miscellaneous genes in the chromosome, 10 were in genes that matched to hypothetical proteins, and 13 were in genes that had no significant matches in the NCBI databases. Eight insertions were in genes encoding proteins associated with virulence in other pathogens, including three in genes involved in lipopolysaccharide biosynthesis, three in genes involved in type III secretion systems (TTSS), and two in genes involved in urease activity. With the use of a sequence from a lambda clone carrying several TTSS genes, Blastn analysis of the partially completed E. ictaluri genome identified a 26,135-bp pathogenicity island containing 33 genes of a TTSS with similarity to the Salmonella pathogenicity island 2 class of TTSS. The characterization of a TTSS apparatus mutant indicated that it retained its ability to invade catfish cell lines and macrophages but was defective in intracellular replication. The mutant also invaded catfish tissues in numbers equal to those of invading wild-type E. ictaluri bacteria but replicated poorly and was slowly cleared from the tissues, while the wild type increased in number.

Abstract: In the present work, the destructive effects of Ultraviolet-A radiation on the African Catfish, Clarias gariepinus was revealed in terms of total protein, cholesterol, glucose, hemoglobin and erythrocytic indices, differential blood cell counting, heamatocrite, creatinine level, Aspartic Amino Transferase, Alanine Amino Transferase and Alkaline Phosphatase. These destructive effects were also confirmed by histopathological changes in liver, blood corpuscles and skin.

Abstract: Hepcidin, originally identified as a 25 amino acid antimicrobial peptide made in the liver, is a key regulator of iron balance and recycling in humans and mice. Closely related hepcidin genes and peptides have also been identified in a number of fish species and in teleosts are thought to function as endogenous antibiotics involved in host defense against infection. Here we report the transcriptional regulation of hepcidin expression by infection and anemia in the channel catfish. Changes in hepcidin expression in catfish challenged with Edwardsiella ictaluri and in fish affected by channel catfish anemia (CCA) were measured by real time quantitative PCR. Hepcidin transcript levels in the livers were increased 4, 19, and 22-fold at 4, 24, and 48h following bacterial challenge, respectively. However, augmented hepcidin expression in the intestine and olfactory sac was detected only at 48h post-infection. Hepcidin transcript levels in the livers of catfish affected by CCA were less than 14% of that present in healthy counterparts. Hepatic hepcidin transcript levels correlated significantly with serum iron concentrations (r=0.54, p<0.05) and with the percent saturation of transferrin (r=0.63, p<0.05). Similar to mammalian hepcidins, channel catfish hepcidin is an iron-responsive gene and may also play important roles in innate host defense to infection and in iron homeostasis. Mammalian hepcidins may have evolved from an antimicrobial peptide and its structure and transcriptional regulatory mechanisms have been conserved throughout vertebrate evolution.

Abstract: The flathead catfish Pylodictis olivaris, a carnivorous fish species native to most of the central interior basin of North America, has been introduced into at least 13 U.S. states and 1 Canadian province. Concurrent declines in abundance of native fishes have been reported in aquatic systems where flathead catfish have been introduced. To evaluate the potential impact of this invasive species on the native fish community we developed an ecosystem simulation model (including flathead catfish) based on empirical data collected from a North Carolina coastal river. The model results suggest that flathead catfish suppress native fish community biomass by 5–50% through both predatory and competitive interactions. However, our model suggests these reductions could be mitigated through sustained exploitation of flathead catfish by recreational or commercial fishers at rates equivalent to those for native flathead catfish populations (annual exploitation = 6–25%). These findings demonstrate the potential...