TL;DR: Molecular and morphological evidence indicates that swamp buffalo populations have strong geographic genetic differentiation and a lack of gene flow, but strong phenotypic uniformity, while river buffalo populations show a weaker phylogeographic structure, but higher phenotypesic diversity (i.e. many breeds).
Abstract: The domestic Asian water buffalo (Bubalus bubalis) is found on all five continents, with a global population of some 202 million. The livelihoods of more people depend on this species than on any other domestic animal. The two distinct types (river and swamp) descended from different wild Asian water buffalo (Bubalus arnee) populations that diverged some 900 kyr BP and then evolved in separate geographical regions. After domestication in the western region of the Indian subcontinent (ca. 6300 years BP), the river buffalo spread west as far as Egypt, the Balkans and Italy. Conversely, after domestication in the China/Indochina border region ca. 3000-7000 years BP, swamp buffaloes dispersed through south-east Asia and China as far as the Yangtze River valley. Molecular and morphological evidence indicates that swamp buffalo populations have strong geographic genetic differentiation and a lack of gene flow, but strong phenotypic uniformity. In contrast, river buffalo populations show a weaker phylogeographic structure, but higher phenotypic diversity (i.e. many breeds). The recent availability of a high-quality reference genome and of a medium-density marker panel for genotyping has triggered a number of genome-wide investigations on diversity, evolutionary history, production traits and functional elements. The growing molecular knowledge combined with breeding programmes should pave the way to improvements in production, environmental adaptation and disease resistance in water buffalo populations worldwide.
TL;DR: Combined analyses of mtDNA sequences from Chinese, Indian, Brazilian/Italian and Southeast Asian/Australian buffalo samples showed independent domestication events in the swamp buffalo from China and the river buffalo from the India subcontinent, supporting the hypothesis of the evolution of domesticated swamp and riverbuffalo from ancestral swamp-like animals.
Abstract: To obtain more knowledge on the origin and genetic diversity of the swamp buffalo (Bubalus bubalis) in China, the complete mitochondrial D-loop sequences of 119 samples representing seven native types were compared. Two mitochondrial DNA (mtDNA) lineages (lineages A and B) were determined for the Chinese swamp buffalo. Examination of the diversity patterns suggest that lineage A has undergone a population expansion event. Divergence of lineages A and B was estimated at 18,000 years ago. Combined analyses of mtDNA sequences from Chinese, Indian, Brazilian/Italian and Southeast Asian/Australian buffalo samples showed independent domestication events in the swamp buffalo from China and the river buffalo from the India subcontinent. The spread of swamp and river buffalo from China and India respectively to mainland Southeast Asia suggests that Southeast Asia is a hybrid zone for buffalo. Our data support the hypothesis of the evolution of domesticated swamp and river buffalo from ancestral swamp-like animals. These ancestral animals were extensively distributed across mainland Asia and most likely are represented today by the wild Asian buffalo (Bubalus arnee).
TL;DR: The wild buffaloes, gaur Bos gaurus and banteng Bos javanicus, are among the most threatened mammals in Vietnam but little information is available on their status and distribution as mentioned in this paper.
TL;DR: Little has been done to characterize Nepal's livestock resources yet continuous attempts have been made to replace them and wild relatives of livestock, including arnee (Bubalus arnee), gaur (Bibos gaurus), wild boar (Sus scrofa), jungle fowl (Gallus gallus) and rock dove (Columba livia), are being infiltrated by genes of domestic animals.
Abstract: Domestic livestock in Nepal belong to 17 species, including five Bovidae (and interspecific hybrids of two of them), seven Aves, two Equidae (not including mules), pig (Sus scrofa), rabbit (Oryctolagus cuniculus) and elephant (Loxodonta africana). Cattle (Bos taurus and Bos indicus) are the most numerous quadruped, followed by goats (Capra hircus), buffalo (Bubalus bubalis) and sheep (Ovis aries). Domestic fowl (Gallus domesticus) are the most common poultry, followed by pigeons (Columba livia) and ducks (Anas platyrhyncos). Government policy is to upgrade and replace local types with improved stock. This policy has had limited success through lack of funding, inconsistent long-term objectives and an inability to pursue programmes in traditional farming systems. The purity of native types is being lost in some areas due to informal programmes by farmers themselves. Except for one type of goat there are no conservation programmes for native breeds. Wild relatives of livestock, including arnee (Bubalus arnee), gaur (Bibos gaurus), wild boar (Sus scrofa), jungle fowl (Gallus gallus) and rock dove (Columba livia), are being infiltrated by genes of domestic animals. Little has been done to characterize Nepal's livestock resources yet continuous attempts have been made to replace them. Conservation needs are to: (i) identify all genetic resources comprising the gene pool of species used as domestic livestock; (ii) develop and use the associated diversity to increase production, achieve sustainable systems and meet demands for particular products; (iii) monitor resources represented by small numbers or that are being displaced; and (iv) preserve resources not in current demand. A start has been made on this by Nepal's membership of a regional network.
TL;DR: In this article, the authors censused wild buffalo Bubalus arnee in Koshi Tappu Wildlife Reserve, Nepal, in March 2004 using methods employed in earlier surveys, and estimated a population of 159 animals.
Abstract: We censused wild buffalo Bubalus arnee in Koshi Tappu Wildlife Reserve, Nepal, in March 2004 using methods employed in earlier surveys, and estimated a population of 159 animals. Since the last census in 2000 the management situation has deteriorated. Guard posts have been evacuated due to the Maoist insurgency. The entire Army Battalion usually posted in the Reserve was at Headquarters at the time of this study and therefore there were no patrols over most of the Reserve, and much human encroachment. Mortality from flooding and road deaths, and possibly poaching for meat, were evident, and males suffered more mortality overall than females. Despite these threats the population had increased since 2000, albeit at a lower rate than previously. Active management, including interventions within the Reserve and a translocation of some individuals to Chitwan National Park, are recommended.