TL;DR: In this paper, the authors consider the problem of comparing complex hierarchical models in which the number of parameters is not clearly defined and derive a measure pD for the effective number in a model as the difference between the posterior mean of the deviances and the deviance at the posterior means of the parameters of interest, which is related to other information criteria and has an approximate decision theoretic justification.
Abstract: Summary. We consider the problem of comparing complex hierarchical models in which the number of parameters is not clearly defined. Using an information theoretic argument we derive a measure pD for the effective number of parameters in a model as the difference between the posterior mean of the deviance and the deviance at the posterior means of the parameters of interest. In general pD approximately corresponds to the trace of the product of Fisher's information and the posterior covariance, which in normal models is the trace of the ‘hat’ matrix projecting observations onto fitted values. Its properties in exponential families are explored. The posterior mean deviance is suggested as a Bayesian measure of fit or adequacy, and the contributions of individual observations to the fit and complexity can give rise to a diagnostic plot of deviance residuals against leverages. Adding pD to the posterior mean deviance gives a deviance information criterion for comparing models, which is related to other information criteria and has an approximate decision theoretic justification. The procedure is illustrated in some examples, and comparisons are drawn with alternative Bayesian and classical proposals. Throughout it is emphasized that the quantities required are trivial to compute in a Markov chain Monte Carlo analysis.
TL;DR: Algebra of Vectors and Matrices, Probability Theory, Tools and Techniques, and Continuous Probability Models.
Abstract: Algebra of Vectors and Matrices. Probability Theory, Tools and Techniques. Continuous Probability Models. The Theory of Least Squares and Analysis of Variance. Criteria and Methods of Estimation. Large Sample Theory and Methods. Theory of Statistical Inference. Multivariate Analysis. Publications of the Author. Author Index. Subject Index.
TL;DR: A fatal flaw of NHST is reviewed and some benefits of Bayesian data analysis are introduced and illustrative examples of multiple comparisons in Bayesian analysis of variance and Bayesian approaches to statistical power are presented.
TL;DR: An overview of the main model components used in chronological analysis, their mathematical formulation, and examples of how such analyses can be performed using the latest version of the OxCal software (v4) are given.
Abstract: If radiocarbon measurements are to be used at all for chronological purposes, we have to use statistical methods for calibration. The most widely used method of calibration can be seen as a simple application of Bayesian statistics, which uses both the information from the new measurement and information from the 14C calibration curve. In most dating applications, however, we have larger numbers of 14C measurements and we wish to relate those to events in the past. Bayesian statistics provides a coherent framework in which such analysis can be performed and is becoming a core element in many 14C dating projects. This article gives an overview of the main model components used in chronological analysis, their mathematical formulation, and examples of how such analyses can be performed using the latest version of the OxCal software (v4). Many such models can be put together, in a modular fashion, from simple elements, with defined constraints and groupings. In other cases, the commonly used "uniform phase" models might not be appropriate, and ramped, exponential, or normal distributions of events might be more useful. When considering analyses of these kinds, it is useful to be able run simulations on synthetic data. Methods for performing such tests are discussed here along with other methods of diagnosing possible problems with statistical models of this kind.
TL;DR: This book presents the first comprehensive treatment of Monte Carlo techniques, including convergence results and applications to tracking, guidance, automated target recognition, aircraft navigation, robot navigation, econometrics, financial modeling, neural networks, optimal control, optimal filtering, communications, reinforcement learning, signal enhancement, model averaging and selection.
Abstract: Monte Carlo methods are revolutionizing the on-line analysis of data in fields as diverse as financial modeling, target tracking and computer vision. These methods, appearing under the names of bootstrap filters, condensation, optimal Monte Carlo filters, particle filters and survival of the fittest, have made it possible to solve numerically many complex, non-standard problems that were previously intractable. This book presents the first comprehensive treatment of these techniques, including convergence results and applications to tracking, guidance, automated target recognition, aircraft navigation, robot navigation, econometrics, financial modeling, neural networks, optimal control, optimal filtering, communications, reinforcement learning, signal enhancement, model averaging and selection, computer vision, semiconductor design, population biology, dynamic Bayesian networks, and time series analysis. This will be of great value to students, researchers and practitioners, who have some basic knowledge of probability. Arnaud Doucet received the Ph. D. degree from the University of Paris-XI Orsay in 1997. From 1998 to 2000, he conducted research at the Signal Processing Group of Cambridge University, UK. He is currently an assistant professor at the Department of Electrical Engineering of Melbourne University, Australia. His research interests include Bayesian statistics, dynamic models and Monte Carlo methods. Nando de Freitas obtained a Ph.D. degree in information engineering from Cambridge University in 1999. He is presently a research associate with the artificial intelligence group of the University of California at Berkeley. His main research interests are in Bayesian statistics and the application of on-line and batch Monte Carlo methods to machine learning. Neil Gordon obtained a Ph.D. in Statistics from Imperial College, University of London in 1993. He is with the Pattern and Information Processing group at the Defence Evaluation and Research Agency in the United Kingdom. His research interests are in time series, statistical data analysis, and pattern recognition with a particular emphasis on target tracking and missile guidance.