TL;DR: FASTER (Fully Automated Statistical Thresholding for EEG artifact Rejection) had >90% sensitivity and specificity for detection of contaminated channels, eye movement and EMG artifacts, linear trends and white noise, and aggregates the ERP across subject datasets, and detects outlier datasets.
TL;DR: The anatomical structure of artifactual variance in RS FMRI time series is examined, by identifying sources that contribute to these signals and where in the brain are they manifested, and the current methods for reducing confounding sources and their effects on connectivity maps are considered.
TL;DR: The details of, and the rationale for, an operationalized fMRI data denoising procedure that involves visual inspection of ICs (96% inter-rater agreement) are described and it is estimated that dozens of subjects/sessions can be processed within a few hours using the described method of visual inspection.
TL;DR: An automated, two-stage PPG data processing method to minimize the effects of motion artifacts and presents novel and consistent techniques to detect the presence of motion artifact in PPGs given higher order statistical information present in the data.
Abstract: Corruption of photopleythysmograms (PPGs) by motion artifacts has been a serious obstacle to the reliable use of pulse oximeters for real-time, continuous state-of-health monitoring. In this paper, we propose an automated, two-stage PPG data processing method to minimize the effects of motion artifacts. The technique is based on our prior work related to motion artifact detection (stage 1) [R. Krishnan, B. Natarajan, and S. Warren, ``Analysis and detection of motion artifacts in photoplethysmographic data using higher order statistics,'' in Proc. IEEE Int. Conf. Acoust., Speech, Signal Process. (ICASSP 2008), Las Vegas, Nevada, Apr. 2008, pp. 613-616] and motion artifact reduction (stage 2) [R. Krishnan, B. Natarajan, and S. Warren, ``Motion artifact reduction in photoplethysmography using magnitude-based frequency domain independent component analysis,'' in Proc. 17th Int. Conf. Comput. Commun. Network, St. Thomas, Virgin Islands, Aug. 2008, pp. 1-5]. Regarding stage 1, we present novel and consistent techniques to detect the presence of motion artifact in PPGs given higher order statistical information present in the data. We analyze these data in the time and frequency domains (FDs) and identify metrics to distinguish between clean and motion-corrupted data. A Neyman-Pearson detection rule is formulated for each of the metrics. Furthermore, by treating each of the metrics as observations from independent sensors, we employ hard fusion and soft fusion techniques presented in [Z. Chair and P. Varshney, ``Optimal data fusion in multiple sensor detection systems,'' IEEE Trans. Aerosp. Electron. Syst., AES, vol. 1, no. 1, pp. 98-101, Jan. 1986] and [C. C. Lee and J. J. Chao, ``Optimum local decision space partitioning for distributed detection,'' IEEE Trans. Aerosp. Electron. Syst., AES, vol. 25, no. 7, pp. 536-544, Jul. 1989], respectively, in order to fuse individual decisions into a global system decision. For stage two, we propose a motion artifact reduction method that is effective even in the presence of severe subject movement. The approach involves an enhanced preprocessing unit consisting of a motion detection unit (MDU, developed in this paper), period estimation unit, and Fourier series reconstruction unit. The MDU identifies clean data frames versus those corrupted with motion artifacts. The period estimation unit determines the fundamental frequency of a corrupt frame. The Fourier series reconstruction unit reconstructs the final preprocessed signal by utilizing the spectrum variability of the pulse waveform. Preprocessed data are then fed to a magnitude-based FD independent component analysis unit. This helps reduce motion artifacts present at the frequencies of the reconstruction components. Experimental results are presented to demonstrate the efficacy of the overall motion artifact reduction method.
TL;DR: A new wavelet based algorithm for removing movement artifacts from fNIRS signals is proposed and tested, showing an average of 18.97dB and 15.54dB attenuation in motion artifacts power for two test subjects without introducing significant distortion in the artifact-free regions of the signal.
Abstract: Functional Near Infrared Spectroscopy (fNIRS) enables researchers to conduct studies in situations where use of other functional imaging methods is impossible. An important shortcoming of fNIRS is the sensitivity to motion artifacts. We propose a new wavelet based algorithm for removing movement artifacts from fNIRS signals. We tested the method on simulated and experimental fNIRS data. The results show an average of 18.97dB and 15.54dB attenuation in motion artifacts power for our two test subjects without introducing significant distortion in the artifact-free regions of the signal.
TL;DR: The present results on soft-tissue artifact, based on fluoroscopic measurements in healthy adult subjects, may be helpful in developing location- and direction-specific weighting factors for use in global optimization algorithms aimed at minimizing the effects of soft-Tissue artifact on calculations of knee joint rotations.
TL;DR: Assessment of the sensitivity and specificity of one prominent correction tool, independent component analysis (ICA), on the scalp and in the source-space using high-resolution EEG indicates that EMG artifact can substantially distort estimates of intracerebral spectral activity.
TL;DR: The proposed Kalman filtering based algorithm provides a suitable solution to the motion artifact removal problem in NIR studies by combining the advantages of the existing adaptive and Wiener filtering methods in one algorithm which allows efficient real time application with no requirement on additional sensor measurements.
Abstract: Background: As a continuation of our earlier work, we present in this study a Kalman filtering based algorithm for the elimination of motion artifacts present in Near Infrared spectroscopy (NIR) measurements. Functional NIR measurements suffer from head motion especially in real world applications where movement cannot be restricted such as studies involving pilots, children, etc. Since head movement can cause fluctuations unrelated to metabolic changes in the blood due to the cognitive activity, removal of these artifacts from NIR signal is necessary for reliable assessment of cognitive activity in the brain for real life applications. Methods: Previously, we had worked on adaptive and Wiener filtering for the cancellation of motion artifacts in NIR studies. Using the same NIR data set we have collected in our previous work where different speed motion artifacts were induced on the NIR measurements we compared the results of the newly proposed Kalman filtering approach with the results of previously studied adaptive and Wiener filtering methods in terms of gains in signal to noise ratio. Here, comparisons are based on paired t-tests where data from eleven subjects are used. Results: The preliminary results in this current study revealed that the proposed Kalman filtering method provides better estimates in terms of the gain in signal to noise ratio than the classical adaptive filtering approach without the need for additional sensor measurements and results comparable to Wiener filtering but better suitable for real-time applications. Conclusions: This paper presented a novel approach based on Kalman filtering for motion artifact removal in NIR recordings. The proposed approach provides a suitable solution to the motion artifact removal problem in NIR studies by combining the advantages of the existing adaptive and Wiener filtering methods in one algorithm which allows efficient real time application with no requirement on additional sensor measurements.
TL;DR: This work proposes the use of imaging channels with negligible distance between light source and detector to detect subject motion, without the need for an additional motion sensor, in functional NIRS.
Abstract: Near infrared spectroscopy (NIRS) is rapidly gaining popularity for functional brain imaging. It is well suited to studies of patients or children; however, in these populations particularly, motion artifacts can present a problem. Here, we propose the use of imaging channels with negligible distance between light source and detector to detect subject motion, without the need for an additional motion sensor. Datasets containing deliberate motion artifacts were obtained from three subjects. Motion artifacts could be detected in the signal from the co-located channels with a minimum sensitivity of 0.75 and specificity of 0.98. Five techniques for removing motion artifact from the functional signals were compared, namely two-input recursive least squares (RLS) adaptive filtering, wavelet-based filtering, independent component analysis (ICA), and two-channel and multiple-channel regression. In most datasets, the median change in SNR across all channels was the greatest using ICA or multiple-channel regression. RLS adaptive filtering produced the smallest increase in SNR. Where sharp spikes were present, wavelet filtering produced the largest SNR increase. ICA and multiple-channel regression are promising ways to reduce motion artifact in functional NIRS without requiring time-consuming manual techniques.
TL;DR: In this paper, a method of filtering a red-eye phenomenon from an acquired digital image including a multiplicity of pixels indicative of color, the pixels forming various shapes of the image, includes analyzing meta-data information, determining one or more regions within the digital image suspected as including red eye artifact, and determining, based at least in part on the meta data analysis, whether the regions are actual red eye artifacts.
Abstract: A method of filtering a red-eye phenomenon from an acquired digital image including a multiplicity of pixels indicative of color, the pixels forming various shapes of the image, includes analyzing meta-data information, determining one or more regions within the digital image suspected as including red eye artifact, and determining, based at least in part on the meta-data analysis, whether the regions are actual red eye artifact. The meta-data information may include information describing conditions under which the image was acquired, captured and/or digitized, acquisition device-specific information, and/film information.
TL;DR: This paper shows how the same algorithm can be adapted to remove the short EMG bursts due to articulation on every trial and indicates that this method accurately attenuates the muscle contamination on the EEG recordings, providing the neurolinguistic community a powerful tool to investigate the brain processes at play during overt language production.
Abstract: Research on the neural basis of language processing has often avoided investigating spoken language production by fear of the electromyographic (EMG) artifacts that articulation induces on the electro-encephalogram (EEG) signal. Indeed, such articulation artifacts are typically much larger than the brain signal of interest. Recently, a Blind Source Separation technique based on Canonical Correlation Analysis was proposed to separate tonic muscle artifacts from continuous EEG recordings in epilepsy. In this paper, we show how the same algorithm can be adapted to remove the short EMG bursts due to articulation on every trial. Several analyses indicate that this method accurately attenuates the muscle contamination on the EEG recordings, providing to the neurolinguistic community a powerful tool to investigate the brain processes at play during overt language production.
TL;DR: A physical activity (PA) recognition algorithm for a wearable wireless sensor network using both ambulatory electrocardiogram (ECG) and accelerometer signals that outperforms the state-of-the-art single accelerometer based PA recognition system by over 24% relative error reduction on the authors' nine-category PA database.
Abstract: A physical activity (PA) recognition algorithm for a wearable wireless sensor network using both ambulatory electrocardiogram (ECG) and accelerometer signals is proposed. First, in the time domain, the cardiac activity mean and the motion artifact noise of the ECG signal are modeled by a Hermite polynomial expansion and principal component analysis, respectively. A set of time domain accelerometer features is also extracted. A support vector machine (SVM) is employed for supervised classification using these time domain features. Second, motivated by their potential for handling convolutional noise, cepstral features extracted from ECG and accelerometer signals based on a frame level analysis are modeled using Gaussian mixture models (GMMs). Third, to reduce the dimension of the tri-axial accelerometer cepstral features which are concatenated and fused at the feature level, heteroscedastic linear discriminant analysis is performed. Finally, to improve the overall recognition performance, fusion of the multimodal (ECG and accelerometer) and multidomain (time domain SVM and cepstral domain GMM) subsystems at the score level is performed. The classification accuracy ranges from 79.3% to 97.3% for various testing scenarios and outperforms the state-of-the-art single accelerometer based PA recognition system by over 24% relative error reduction on our nine-category PA database.
TL;DR: Image artifacts in SD OCT volume scanning are common and frequently involve segmentation errors, but may affect retinal thickness measurements in a clinically significant manner.
TL;DR: This paper presents a new identification procedure based on an efficient combination of independent component analysis (ICA), mutual information, and wavelet analysis for fully automatic ocular artifact suppression that could significantly enhance the ocular artifacts detection and suppression.
TL;DR: This paper attempts to clarify several methodological issues regarding the different approaches with an extensive validation based on event-related potentials (ERPs) based methods, and finds a clearer distinction between the most widely used cleaning methods.
TL;DR: The proposed method outperforms noise removal techniques such as wavelet denoising and adaptive filtering and shows a primary heart signal detection rate of 99.36% with a false positive rate of 1.3%.
Abstract: This paper presents a method of extracting primary heart sound signals from chest-worn accelerometer data in the presence of motion artifacts. The proposed method outperforms noise removal techniques such as wavelet denoising and adaptive filtering. Results from six subjects show a primary heart signal detection rate of 99.36% with a false positive rate of 1.3%.
TL;DR: The automated ECG-artifact removal method for trunk SEMG recordings proposed in this study was demonstrated to produce a very good detection rate and preserved essential EMG components while keeping its distortion to minimum.
TL;DR: The objective of this study was to develop an approach aiming at correcting several physical artifact sources without producing artifacts caused by interpolation and without the general information loss in the close vicinity to the implants.
Abstract: Purpose Metal-induced artifacts may cause severe problems in clinical computed tomography (CT) imaging and may impair diagnosis as well as overall image quality. Many approaches for reducing these artifacts tackle the problem by simply ignoring or interpolating the metal traces in the raw data, which results in a general information loss and additional artifacts in the corrected image. It was the objective of this study to develop an approach aiming at correcting several physical artifact sources. We have also tried to minimize the impact on spatial resolution and attempted to avoid new artifacts resulting from the correction. Materials and methods The algorithm works with a first volumetric reconstruction followed by threshold-based metal prostheses segmentation. The segmented metal implants are then forward projected and the resulting sinogram entries are squared and combined, followed by a second reconstruction to yield correction volumes. The resulting volumes are then combined linearly with a combination weight determined to minimize the flatness of the initial image. A directional filtering algorithm following the beam hardening correction applies a nonlinear convolution in the metal traces of the sinogram which reduces existing metal-induced noise artifacts. Phantom measurements on a polyethylene (PE) disc with different inserts and a semi-anthropomorphic hip phantom with optional bone and titanium inserts were used for evaluating the algorithm. Patient datasets containing uni- and bilateral hip endoprostheses verified the applicability and efficiency on realistic clinical cases. Results Deviations in CT values were reduced to below 3 HU on average. Image noise reduction of up to 70% was achieved (average noise reduction of 37%) with a more homogeneous CT value distribution in soft-tissue areas. A comparison to standard interpolation methods showed superior artifact suppression without producing artifacts caused by interpolation and without the general information loss in the close vicinity to the implants. The impact on spatial resolution was minimized as compared with interpolation algorithms. Conclusions Metal artifacts caused by hip-endoprostheses were strongly reduced. Soft tissue areas and skeletal structures surrounding the implants were well restored. The correction works by postprocessing CT datasets and it is applicable to any reconstructed image without a priori knowledge.
TL;DR: In this article, the authors present an image processing apparatus which processes an image of a tomogram obtained by capturing an eye to be examined by a tomography apparatus, which comprises, layer candidate detection means for detecting layer candidates of a retina of the eye, artifact region determination means for determining an artifact region in the tomogram based on image features obtained using the layer candidates, and image correction means for correcting intensities in the artifact region based on a determination result of the artifact regions determination means and image features in the region.
Abstract: The present invention an image processing apparatus, which processes an image of a tomogram obtained by capturing an image of an eye to be examined by a tomography apparatus, comprises, layer candidate detection means for detecting layer candidates of a retina of the eye to be examined from the tomogram, artifact region determination means for determining an artifact region in the tomogram based on image features obtained using the layer candidates, and image correction means for correcting intensities in the artifact region based on a determination result of the artifact region determination means and image features in the region.
TL;DR: This paper is concentrated on developing a BCI system, a Virtual Keyboard using the LabVIEW platform and the kurtosis coefficient and amplitude characteristics of the eye blink signals are used to detect the control signals.
Abstract: A Brain Computer Interface (BCI) provides a new communication channel between human brain and the computer. This paper is concentrated on developing a BCI system, a Virtual Keyboard using the LabVIEW platform. The Electroencephalogram (EEG) signal contains the technical artifacts (noise from the electric power source, amplitude artifact, etc.) and biological artifacts (eye artifacts, ECG and EMG artifacts). Eye blink is one of the main artifacts in the EEG signal. But in this context the Eye blinks are not artifacts and are control signals to select the blocks/characters in the Virtual Keyboard. The kurtosis coefficient and amplitude characteristics of the eye blink signals are used to detect the control signals.
TL;DR: In this article, principal component analysis is performed on the multi-dimensional signal to produce signal data, which is then used to cancel the signal artifact in one embodiment, in order to produce a diagnostic output.
Abstract: A medical device includes one or more sensors used to acquire a multi-dimensional signal. In one embodiment, principal component analysis is performed on the multi-dimensional signal to produce signal data. The principal component analysis results are used to cancel signal artifact in one embodiment. A medical device controller produces one of a therapy control and a diagnostic output in response to the signal data.
TL;DR: How to recognize, troubleshoot, and prove that an EEG pattern is an artifact will be reviewed for the novice EEG technologist.
Abstract: Obtaining a quality EEG in the intensive care unit (ICU) is a very rewarding experience for the EEG technologist "Quality" is defined as a measure of excellence or state of being free from defects It takes more than knowing how to obtain a quality record; it takes hands-on experience and time Electroencephalography is a valuable neurodiagnostic tool in critically ill patients However, the ICU is a challenging environment to obtain a high quality EEG tracing because artifacts are exceedingly common Dealing with artifact effectively is an essential function of the EEG technologist The goal of this paper is to review both physiological and nonphysiological artifacts commonly encountered in an ICU setting How to recognize, troubleshoot, and prove that an EEG pattern is an artifact will be reviewed for the novice EEG technologist
TL;DR: A continuous time electrode skin impedance monitoring system is implemented in parallel with ECG monitoring to avoid degradation of the ECG signal quality and chopper stabilized AC current sources are adopted.
Abstract: A continuous time electrode skin impedance monitoring system is implemented in parallel with ECG monitoring. To avoid degradation of the ECG signal quality, chopper stabilized AC current sources are adopted. Measured impedance signal is used as a reference signal input for a post processing adaptive filter removing motion artifacts in the ECG signal. The impedance measurement core is implemented in 0.5µm CMOS process and dissipates 2.4µA from a 2V.
TL;DR: It is concluded that the EEMD based single channel technique shows better performance compared to template subtraction and the wavelet based alternative for both high and low signal-to-artifact ratio and for simulated and real-life data, but at the expense of a higher computational load.
Abstract: The electrocardiography (ECG) artifact in surface electromyography (sEMG) is a major source of noise influencing the analyses. Moreover, in many cases the sEMG signal is the only available signal, making this removal more complicated. We compare the performance of two recently described single channel blind source separation methods with the commonly used template subtraction method on both simulations and real-life data. These two methods decompose a single channel recording into a multichannel representation before applying independent component analysis to these multichannel data. The decomposition methods are the wavelet decomposition and ensemble empirical mode decomposition (EEMD). The EEMD based single channel technique shows better performance compared to template subtraction and the wavelet based alternative for both high and low signal-to-artifact ratio and for simulated and real-life data, but at the expense of a higher computational load. We conclude that the EEMD based method has its potential in eliminating spike-like artifacts in electrophysiological signals.
TL;DR: An algebraic approach based on numerical differentiation, recently introduced from operational calculus is studied, which is able to detect not only eye blink artifacts, but also any spike shaped artifact, even if it is very low in amplitude.
Abstract: Single channel EEG systems are very useful in EEG based applications where real time processing, low computational complexity and low cumbersomeness are critical constrains. These include brain-computer interface and biofeedback devices and also some clinical applications such as EEG recording on babies or Alzheimer’s disease recognition. In this paper we address the problem of eye blink artifacts detection in such systems. We study an algebraic approach based on numerical differentiation, which is recently introduced from operational calculus. The occurrence of an artifact is modeled as an irregularity which appears explicitly in the time (generalized) derivative of the EEG signal as a delay. Manipulating such delay is easy with the operational calculus and it leads to a simple joint detection and localization algorithm. While the algorithm is devised based on continuous-time arguments, the final implementation step is fully realized in a discrete-time context, using very classical discrete-time FIR filters. The proposed approach is compared with three other approaches: (1) the very basic threshold approach, (2) the approach that combines the use of median filter, matched filter and nonlinear energy operator (NEO) and (3) the wavelet based approach. Comparison is done on: (a) the artificially created signal where the eye activity is synthesized from real EEG recordings and (b) the real single channel EEG recordings from 32 different brain locations. Results are presented with Receiver Operating Characteristics curves. The results show that the proposed approach compares to the other approaches better or as good as, while having lower computational complexity with simple real time implementation. Comparison of the results on artificially created and real signal leads to conclusions that with detection techniques based on derivative estimation we are able to detect not only eye blink artifacts, but also any spike shaped artifact, even if it is very low in amplitude.
TL;DR: In this paper, non-corrupted signal segments are detected by a data modeling processor implementing an artificial neural network, which is trained to detect artifact in the signal and gate valid signal segments for use in determining physiological parameters.
Abstract: According to embodiments, non-corrupted signal segments are detected by a data modeling processor implementing an artificial neural network. The neural network may be trained to detect artifact in the signal (e.g., a PPG signal or some wavelet representation of a PPG signal) and gate valid signal segments for use in determining physiological parameters, such as, for example, pulse rate, oxygen saturation, pulse rate, respiration rate, and respiratory effort. When an artifact is detected, previously received known-good signal segments may be buffered and replace the signal segment or segments containing artifact. A regression analysis may also be performed in order to extrapolate new data from previously received known-good signal segments. In this way, more accurate and reliable physiological parameters may be determined.
TL;DR: This work demonstrates the use of a novel artifact removal algorithm together with a 24-bit EEG system to achieve similar recordings as those obtained with the dedicated TMS-compatible EEG system, paving the way for more researchers and clinicians to use T MS-evoked responses for research and diagnosis of a wide spectrum of disorders.
TL;DR: In this paper, a self-adaptive EEG signal ocular artifact automatic removal method was proposed, which consists of real-time empirical mode decomposition (EMD) of collected EEG data having ocular artifacts; performing Hilbert transform of all obtained mode components to obtain a instantaneous frequency.
Abstract: The invention provides a self-adaptive EEG signal ocular artifact automatic removal method, which belongs to the technical field of biological information and is mainly used in a pretreatment process for acquiring an EEG signal. The method comprises: performing real-time empirical mode decomposition (EMD) of collected EEG data having ocular artifacts; performing Hilbert transform of all obtained mode components to obtain a instantaneous frequency; according to the time-frequency property of the ocular artifacts in the EEG signal and the statistical property of the empirical mode components, performing the threshold filtering of all obtained mode components; and performing data reconstruction by using all mode components obtained after filtration. The method solves the manual screening problem of the empirical mode components having the ocular artifacts, thereby automatically removing the ocular artifacts from the EEG signal.
TL;DR: A new algorithm is presented that automatically and reliably removes artifacts from EEG based on blind source separation and support vector machine that shows improved results over all datasets.
Abstract: Electroencephalography (EEG) recordings are often obscured by physiological artifacts that can render huge amounts of data useless and thus constitute a key challenge in current brain-computer interface research. This paper presents a new algorithm that automatically and reliably removes artifacts from EEG based on blind source separation and support vector machine. Performance on a motor imagery task is compared for artifact-contaminated and preprocessed signals to verify the accuracy of the proposed approach. The results showed improved results over all datasets. Furthermore, the online applicability of the algorithm is investigated.
TL;DR: The proposed method, called cyclostationary source extraction (CSE), is able to extract components of ballistocardiogram (BCG) components without much destructive effect on the background electroencephalogram (EEG).
Abstract: Ballistocardiogram (BCG) artifact is considered here as the sum of a number of independent cyclostationary components having the same cycle frequency. Our proposed method, called cyclostationary source extraction (CSE), is able to extract these components without much destructive effect on the background electroencephalogram (EEG). It is shown that the proposed method outperforms other methods particularly in preserving the remaining signals. The CSE is utilized to remove the BCG artifact from real EEG data recorded inside the magnetic resonance (MR) scanner, i.e., visual evoked potential (VEP). The results are compared to the results of benchmark BCG removal techniques. Analyzing the power spectral density of the cleaned EEG data, it is shown that CSE effectively removes the frequency components corresponding to the BCG artifact. It is also shown that VEPs recorded inside the scanner and processed using the proposed method are more correlated with the VEPs recorded outside the scanner. Moreover, there is no need for electrocardiogram (ECG) data in this method as the cycle frequency of the BCG is directly computed from the contaminated EEG signals.