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  4. 2015
Showing papers on "Antigen processing published in 2015"
Journal Article•10.1038/NRI3818•
The ins and outs of MHC class II-mediated antigen processing and presentation

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Paul A. Roche1, Kazuyuki Furuta2•
National Institutes of Health1, Okayama University2
01 Apr 2015-Nature Reviews Immunology
TL;DR: The current knowledge of the mechanisms of uptake and processing of antigens, the intracellular formation of peptide–MHC class II complexes, the intrusion into the plasma membrane of the APC plasma membrane and their ultimate degradation are described.
Abstract: Antigenic peptide-loaded MHC class II molecules (peptide-MHC class II) are constitutively expressed on the surface of professional antigen-presenting cells (APCs), including dendritic cells, B cells, macrophages and thymic epithelial cells, and are presented to antigen-specific CD4(+) T cells. The mechanisms of antigen uptake, the nature of the antigen processing compartments and the lifetime of cell surface peptide-MHC class II complexes can vary depending on the type of APC. It is likely that these differences are important for the function of each distinct APC subset in the generation of effective adaptive immune responses. In this Review, we describe our current knowledge of the mechanisms of uptake and processing of antigens, the intracellular formation of peptide-MHC class II complexes, the intracellular trafficking of peptide-MHC class II complexes to the APC plasma membrane and their ultimate degradation.

946 citations

Journal Article•10.1146/ANNUREV-IMMUNOL-032414-112334•
T cell antigen receptor recognition of antigen-presenting molecules.

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Jamie Rossjohn1, Stephanie Gras, John J. Miles2, Stephen J. Turner3, Dale I. Godfrey3, James McCluskey3 •
Monash University, Clayton campus1, QIMR Berghofer Medical Research Institute2, University of Melbourne3
10 Apr 2015-Annual Review of Immunology
TL;DR: TCRs show remarkable structural and biological versatility in engaging different classes of Ag that are presented by polymorphic and monomorphic Ag-presenting molecules of the immune system.
Abstract: The Major Histocompatibility Complex (MHC) locus encodes classical MHC class I and MHC class II molecules and nonclassical MHC-I molecules. The architecture of these molecules is ideally suited to capture and present an array of peptide antigens (Ags). In addition, the CD1 family members and MR1 are MHC class I-like molecules that bind lipid-based Ags and vitamin B precursors, respectively. These Ag-bound molecules are subsequently recognized by T cell antigen receptors (TCRs) expressed on the surface of T lymphocytes. Structural and associated functional studies have been highly informative in providing insight into these interactions, which are crucial to immunity, and how they can lead to aberrant T cell reactivity. Investigators have determined over thirty unique TCR-peptide-MHC-I complex structures and twenty unique TCR-peptide-MHC-II complex structures. These investigations have shown a broad consensus in docking geometry and provided insight into MHC restriction. Structural studies on TCR-mediated recognition of lipid and metabolite Ags have been mostly confined to TCRs from innate-like natural killer T cells and mucosal-associated invariant T cells, respectively. These studies revealed clear differences between TCR-lipid-CD1, TCR-metabolite-MR1, and TCR-peptide-MHC recognition. Accordingly, TCRs show remarkable structural and biological versatility in engaging different classes of Ag that are presented by polymorphic and monomorphic Ag-presenting molecules of the immune system.

734 citations

Journal Article•10.1016/J.BBALIP.2014.12.006•
PI3K signalling in inflammation.

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Phillip T. Hawkins1, Len R. Stephens1•
Babraham Institute1
01 Jun 2015-Biochimica et Biophysica Acta
TL;DR: Selective inhibition of PI3Kδ, γ or β has each been shown to reduce the severity of inflammation in one or more models of autoimmune disease, respiratory disease or allergic inflammation, with dual γ/δ or β/ δ inhibition generally proving more effective.

502 citations

Journal Article•10.1186/S13071-014-0608-1•
Sm16, a major component of Schistosoma mansoni cercarial excretory/secretory products, prevents macrophage classical activation and delays antigen processing

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David E. Sanin1, Adrian P. Mountford1•
University of York1
06 Jan 2015-Parasites & Vectors
TL;DR: Findings show that Sm16 is a major component of S. mansoni cercarial E/S products, and is partly responsible for its immune-regulatory properties, and suggest that accumulation of Sm16 in the skin after percutaneous infection with S.mansoni cerbariae could contribute to limiting dermal inflammation.
Abstract: Schistosoma mansoni cercariae penetrate the skin by releasing excretory/secretory (E/S) products known as 0-3hRP, which are associated with immune modulation through Toll like receptor (TLR) signalling. Furthermore, these secretions contain Sm16, which when given to cells as a recombinant protein inhibits human monocyte derived cytokine responses to TLR4 and TLR3 ligands. Nonetheless, the extent and mechanism(s) of these inhibitory effects remain largely uncharacterized. Murine bone marrow derived macrophages were exposed to different fractions of 0-3hRP, obtained via ultracentrifugation, or recombinant Sm16. These cells were exposed to the parasite molecules in combination with different TLR ligands, or Interferon gamma, and tested for the production of the cytokines IL-10 and IL-12p40, and their ability to process antigen. The immunomodulatory function of 0-3hRP is enriched predominantly in the pellet fraction, which contains a greater proportion of Sm16, also corroborating the ability of recombinant Sm16 to inhibit macrophage activation in response to TLR ligands. We further demonstrate that Sm16 blocks classical activation of macrophages to LPS or IFN-γ stimulation in vitro, and that inhibition of macrophage classical activation is independent of TLR2 recognition. Finally we show that Sm16 shares the altered intracellular processing observed for 0-3hRP, and is able to delay antigen processing by macrophages. Collectively, our findings show that Sm16 is a major component of S. mansoni cercarial E/S products, and is partly responsible for its immune-regulatory properties. Moreover, we propose that the mechanism employed by Sm16 to exert its inhibitory function is likely to be linked with alteration of endosomal trafficking and is not dependent on particular TLR receptors. Finally, we suggest that accumulation of Sm16 in the skin after percutaneous infection with S. mansoni cercariae could contribute to limiting dermal inflammation.

402 citations

Journal Article•10.1158/1078-0432.CCR-15-0244•
Differential Expression of Immune-Regulatory Genes Associated with PD-L1 Display in Melanoma: Implications for PD-1 Pathway Blockade

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Janis M. Taube1, Geoffrey D. Young1, Tracee L. McMiller1, Shuming Chen1, January T. Salas1, Theresa S. Pritchard1, Haiying Xu1, Alan K. Meeker1, Jinshui Fan1, Chris Cheadle1, Alan E. Berger1, Drew M. Pardoll1, Suzanne L. Topalian1 •
Johns Hopkins University School of Medicine1
01 Sep 2015-Clinical Cancer Research
TL;DR: Functional annotation clustering based on whole-genome expression profiling revealed pathways upregulated in PD-L1+ melanomas, involving immune cell activation, inflammation, and antigen processing and presentation, which elucidate the complexity of immune checkpoint regulation in the tumor microenvironment.
Abstract: Purpose: Blocking the immunosuppressive PD-1/PD-L1 pathway has antitumor activity in multiple cancer types, and PD-L1 expression on tumor cells and infiltrating myeloid cells correlates with the likelihood of response. We previously found that IFNG (interferon-gamma) was overexpressed by tumor-infiltrating lymphocytes in PD-L1+ versus PD-L1(−) melanomas, creating adaptive immune resistance by promoting PD-L1 display. This study was undertaken to identify additional factors in the PD-L1+ melanoma microenvironment coordinately contributing to immunosuppression. Experimental Design: Archived, formalin-fixed paraffin-embedded melanoma specimens were assessed for PD-L1 protein expression at the tumor cell surface with IHC. Whole-genome expression analysis, quantitative (q)RT-PCR, IHC, and functional in vitro validation studies were used to assess factors differentially expressed in PD-L1+ versus PD-L1(−) melanomas. Results: Functional annotation clustering based on whole-genome expression profiling revealed pathways upregulated in PD-L1+ melanomas, involving immune cell activation, inflammation, and antigen processing and presentation. Analysis by qRT-PCR demonstrated overexpression of functionally related genes in PD-L1+ melanomas, involved in CD8+ T-cell activation ( CD8A , IFNG , PRF1 , and CCL5 ), antigen presentation ( CD163 , TLR3 , CXCL1 , and LYZ ), and immunosuppression [ PDCD1 (PD-1), CD274 (PD-L1), and LAG3 , IL10 ]. Functional studies demonstrated that some factors, including IL10 and IL32-gamma, induced PD-L1 expression on monocytes but not tumor cells. Conclusions: These studies elucidate the complexity of immune checkpoint regulation in the tumor microenvironment, identifying multiple factors likely contributing to coordinated immunosuppression. These factors may provide tumor escape mechanisms from anti–PD-1/PD-L1 therapy, and should be considered for cotargeting in combinatorial immunomodulation treatment strategies. Clin Cancer Res; 21(17); 3969–76. ©2015 AACR .

247 citations

Journal Article•10.1021/NN5066793•
pH-Responsive Poly(d,l-lactic-co-glycolic acid) Nanoparticles with Rapid Antigen Release Behavior Promote Immune Response

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Qi Liu1, Xiaoming Chen1, Jilei Jia1, Weifeng Zhang1, Tingyuan Yang1, Lianyan Wang1, Guanghui Ma •
Chinese Academy of Sciences1
24 Apr 2015-ACS Nano
TL;DR: P pH-responsive PLGA NPs, which induced strong cellular immune responses and offered antibody protection, could be potentially useful as effective vaccine delivery and adjuvant systems for the therapy of intracellular infectious diseases and virus infection.
Abstract: In the quest to treat intracellular infectious diseases and virus infection, nanoparticles (NPs) have been considered to be efficient tools for inducing potent immune responses, specifically cellular immunity. Antigen processing and presenting by antigen presenting cells (APCs) could influence immune response, especially the priming of T-cell-mediated cellular immunity. Here, we fabricated pH-responsive poly(D,L-lactic-co-glycolic acid) (PLEA) NPs with rapid antigen intracellular release behavior in APCs. The NPs, which had thin shells and large inner space, contain ammonium bicarbonate (NH4HCO3), which could regulate release in endosomes and lysosomes, acting as an antigen release promoter in dendritic cells (DCs), and were coencapsulated with antigen (ovalbumin, OVA). Hydrogen ions (H+) in DC endosomes and lysosomes (pH similar to 5.0 and 6.5) could react with NH4HCO3 to generate NH3 and CO2, which broke NPs and released antigens. After uptake by DCs, antigens encapsulated in pH-responsive PLEA NPs could escape from lysosomes into the cytoplasm and be cross-presented. Moreover, the NPs induced up-regulation of co-stimulatory molecules and stimulated cytokine production. Mouse immunization with pH-responsive PLEA NPs induced greater lymphocyte activation, more antigen-specific CD8(+) T cells, stronger cytotoxic capacity (IFN-gamma and granzyme B), enhanced antigen-specific IgG antibodies, and higher serum IgG2a/IgG1, indicating cellular immunity. The NPs also improved generation of memory T cells to protect against reinfection. Thus, pH-responsive PLEA NPs, which induced strong cellular immune responses and offered antibody protection, could be potentially useful as effective vaccine delivery and adjuvant systems for the therapy of intracellular infectious diseases and virus infection.

230 citations

Journal Article•10.3389/FIMMU.2015.00029•
Augmenting Antitumor Immune Responses with Epigenetic Modifying Agents

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Erika Heninger1, Timothy E. G. Krueger1, Joshua M. Lang1•
University of Wisconsin-Madison1
04 Feb 2015-Frontiers in Immunology
TL;DR: The potential reversal of immunosuppression by epigenetic modulation is therefore a promising and versatile therapeutic approach to reinstate endogenous immune recognition and tumor lysis.
Abstract: Epigenetic silencing of immune-related genes is a striking feature of the cancer genome that occurs in the process of tumorigenesis. This phenomena impacts antigen processing and antigen presentation by tumor cells and facilitates evasion of immunosurveillance. Further modulation of the tumor microenvironment by altered expression of immunosuppressive cytokines impairs antigen-presenting cells and cytolytic T-cell function. The potential reversal of immunosuppression by epigenetic modulation is therefore a promising and versatile therapeutic approach to reinstate endogenous immune recognition and tumor lysis. Pre-clinical studies have identified multiple elements of the immune system that can be modulated by epigenetic mechanisms and result in improved antigen presentation, effector T-cell function, and breakdown of suppressor mechanisms. Recent clinical studies are utilizing epigenetic therapies prior to, or in combination with, immune therapies to improve clinical outcomes.

196 citations

Journal Article•10.3389/FIMMU.2015.00363•
Cross-Presentation of Cell-Associated Antigens by MHC Class I in Dendritic Cell Subsets.

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Enric Gutiérrez-Martínez1, Remi Planès1, Giorgio Anselmi1, Matthew Reynolds1, Shinelle Menezes1, Aimé Cézaire Adiko1, Aimé Cézaire Adiko2, Loredana Saveanu2, Loredana Saveanu1, Pierre Guermonprez1 •
King's College London1, Paris Diderot University2
17 Jul 2015-Frontiers in Immunology
TL;DR: In vivo and in vitro evidence supporting the current mechanistic models and disscuss their physiological relevance to the cross-presentation of cell-associated antigens by DCs subsets are reviewed.
Abstract: Dendritic cells have the unique ability to pick up dead cells carrying antigens in tissue and migrate to the lymph nodes where they can cross-present cell-associated antigens by MHC class I to CD8+ T cells. There is strong in vivo evidence that the mouse XCR1+ dendritic cells subset acts as a key player in this process. The intracellular processes underlying cross-presentation remain controversial and several pathways have been proposed. Indeed, a wide number of studies have addressed the cellular process of cross-presentation in vitro using a variety of sources of antigen and antigen presenting cells. Here we review the in vivo and in vitro evidence supporting the current mechanistic models and disscuss their physiological relevance to the cross-presentation of cell-associated antigens by dendritic cells subsets

159 citations

Journal Article•10.1038/CMI.2014.105•
Classical and non-classical MHC I molecule manipulation by human cytomegalovirus: so many targets—but how many arrows in the quiver?

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Anne Halenius1, Carolin Gerke1, Hartmut Hengel1•
University of Freiburg1
01 Mar 2015-Cellular & Molecular Immunology
TL;DR: This review summarizes achievements from more than two decades of intense research on how human cytomegalovirus manipulates MHC I molecules and escapes elimination by the immune system.
Abstract: Major mechanisms for the recognition of pathogens by immune cells have evolved to employ classical and non-classical major histocompatibility complex class I (MHC I) molecules. Classical MHC I molecules present antigenic peptide ligands on infected cells to CD8+ T cells, whereas a key function for non-classical MHC I molecules is to mediate inhibitory or activating stimuli in natural killer (NK) cells. The structural diversity of MHC I puts immense pressure on persisting viruses, including cytomegaloviruses. The very large coding capacity of the human cytomegalovirus allows it to express a whole arsenal of immunoevasive factors assigned to individual MHC class I targets. This review summarizes achievements from more than two decades of intense research on how human cytomegalovirus manipulates MHC I molecules and escapes elimination by the immune system.

138 citations

Journal Article•10.1038/NI.3271•
T cell receptor reversed polarity recognition of a self-antigen major histocompatibility complex

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Dennis X. Beringer1, Fleur S. Kleijwegt2, Florian Wiede1, Arno R. van der Slik2, Khai Lee Loh1, Jan Petersen3, Jan Petersen1, Nadine L. Dudek1, Gaby Duinkerken2, Sandra Laban2, Antoinette M. Joosten2, Julian P. Vivian3, Julian P. Vivian1, Zhenjun Chen3, Anthony W. Uldrich3, Anthony W. Uldrich4, Dale I. Godfrey4, Dale I. Godfrey3, James McCluskey3, David Price5, David Price6, Kristen J. Radford7, Anthony W. Purcell1, Tatjana Nikolic2, Hugh H. Reid1, Hugh H. Reid3, Tony Tiganis1, Bart O. Roep2, Jamie Rossjohn6, Jamie Rossjohn1, Jamie Rossjohn3 •
Monash University, Clayton campus1, Leiden University Medical Center2, Australian Research Council3, University of Melbourne4, National Institutes of Health5, Cardiff University6, University of Queensland7
01 Nov 2015-Nature Immunology
TL;DR: Two TCRs derived from human induced T regulatory cells complexed to an MHC class II molecule presenting a proinsulin-derived peptide elicited a peptide-reactive, MHC-restricted T cell signal, a finding that fundamentally challenges the understanding of TCR recognition.
Abstract: Central to adaptive immunity is the interaction between the αβ T cell receptor (TCR) and peptide presented by the major histocompatibility complex (MHC) molecule. Presumably reflecting TCR-MHC bias and T cell signaling constraints, the TCR universally adopts a canonical polarity atop the MHC. We report the structures of two TCRs, derived from human induced T regulatory (iT(reg)) cells, complexed to an MHC class II molecule presenting a proinsulin-derived peptide. The ternary complexes revealed a 180° polarity reversal compared to all other TCR-peptide-MHC complex structures. Namely, the iT(reg) TCR α-chain and β-chain are overlaid with the α-chain and β-chain of MHC class II, respectively. Nevertheless, this TCR interaction elicited a peptide-reactive, MHC-restricted T cell signal. Thus TCRs are not 'hardwired' to interact with MHC molecules in a stereotypic manner to elicit a T cell signal, a finding that fundamentally challenges our understanding of TCR recognition.

136 citations

Journal Article•10.3389/FIMMU.2014.00672•
Antigen Presentation by MHC-Dressed Cells

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Masafumi Nakayama1•
Tohoku University1
05 Jan 2015-Frontiers in Immunology
TL;DR: This review focuses on the physiological role of antigen presentation by MHCI- or MHCII-dressed cells, and also discusses differences and similarities between trogocytosis and exosome-mediated transfer of MHC.
Abstract: Professional antigen presenting cells (APCs) such as conventional dendritic cells (DCs) process protein antigens to MHC-bound peptides and then present the peptide-MHC complexes to T cells. In addition to this canonical antigen presentation pathway, recent studies have revealed that DCs and non-APCs can acquire MHC class I (MHCI) and/or MHC class II (MHCII) from neighboring cells through a process of cell-cell contact-dependent membrane transfer called trogocytosis. These MHC-dressed cells subsequently activate or regulate T cells via the preformed antigen peptide-MHC complexes without requiring any further processing. In addition to trogocytosis, intercellular transfer of MHCI and MHCII can be mediated by secretion of membrane vesicles such as exosomes from APCs, generating MHC-dressed cells. This review focuses on the physiological role of antigen presentation by MHCI- or MHCII-dressed cells, and also discusses differences and similarities between trogocytosis and exosome-mediated transfer of MHC.
Journal Article•10.1074/JBC.M115.682708•
Interleukin 10 (IL-10)-mediated Immunosuppression MARCH-I INDUCTION REGULATES ANTIGEN PRESENTATION BY MACROPHAGES BUT NOT DENDRITIC CELLS

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Sharad K. Mittal1, Kyung-Jin Cho1, Satoshi Ishido2, Paul A. Roche1•
National Institutes of Health1, Showa Pharmaceutical University2
06 Nov 2015-Journal of Biological Chemistry
TL;DR: It is reported that IL-10 stimulates expression of the E3 ubiquitin ligase March-I in activated macrophages, thereby down-regulating MHC-II, CD86, and antigen presentation to CD4 T cells.
Journal Article•10.1016/J.SMIM.2015.03.010•
Viral immune evasion: Lessons in MHC class I antigen presentation.

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Michael L. van de Weijer1, Rutger D. Luteijn1, Emmanuel J. H. J. Wiertz1•
Utrecht University1
01 Mar 2015-Seminars in Immunology
TL;DR: This review highlights how viral immunoevasins have increased the understanding of MHC class I-restricted antigen presentation by improving basic principles of ER-associated protein degradation via the ubiquitin-proteasome pathway.
Journal Article•10.1083/JCB.201412074•
Mast cells and dendritic cells form synapses that facilitate antigen transfer for T cell activation

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Amanda Carroll-Portillo1, Judy L. Cannon1, Joost te Riet2, Anna M. Holmes1, Yuko Kawakami3, Toshiaki Kawakami3, Alessandra Cambi2, Diane S. Lidke1 •
University of New Mexico1, Radboud University Nijmegen2, La Jolla Institute for Allergy and Immunology3
31 Aug 2015-Journal of Cell Biology
TL;DR: This work has shown that direct interactions between mast cells and dendritic cells form synapses that stimulate changes in the secretion profile of select cytokines and facilitate transfer of endosomal contents from activated MCs to DCs.
Abstract: Mast cells (MCs) produce soluble mediators such as histamine and prostaglandins that are known to influence dendritic cell (DC) function by stimulating maturation and antigen processing. Whether direct cell-cell interactions are important in modulating MC/DC function is unclear. In this paper, we show that direct contact between MCs and DCs occurs and plays an important role in modulating the immune response. Activation of MCs through FceRI cross-linking triggers the formation of stable cell-cell interactions with immature DCs that are reminiscent of the immunological synapse. Direct cellular contact differentially regulates the secreted cytokine profile, indicating that MC modulation of DC populations is influenced by the nature of their interaction. Synapse formation requires integrin engagement and facilitates the transfer of internalized MC-specific antigen from MCs to DCs. The transferred material is ultimately processed and presented by DCs and can activate T cells. The physiological outcomes of the MC-DC synapse suggest a new role for intercellular crosstalk in defining the immune response.
Journal Article•10.1080/15548627.2015.1045178•
Differential use of autophagy by primary dendritic cells specialized in cross-presentation.

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Justine D. Mintern1, Christophe Macri, Wei Jin Chin1, Scott E. Panozza2, Elodie Segura3, Natalie L. Patterson1, Peter Zeller1, Dorothée Bourges2, Sammy Bedoui2, Paul J. McMillan2, Adi Idris4, Cameron J. Nowell5, Andrew Brown2, Kristen J. Radford4, Angus P. R. Johnston, Jose A Villadangos1 •
Walter and Eliza Hall Institute of Medical Research1, University of Melbourne2, French Institute of Health and Medical Research3, University of Queensland4, Ludwig Institute for Cancer Research5
07 May 2015-Autophagy
TL;DR: The findings highlight the differential use of autophagy and its machinery by primary cells equipped with specific immune function, and prompt careful reassessment of the participation of this endocytic pathway in antigen cross-presentation.
Abstract: Antigen-presenting cells survey their environment and present captured antigens bound to major histocompatibility complex (MHC) molecules. Formation of MHC-antigen complexes occurs in specialized compartments where multiple protein trafficking routes, still incompletely understood, converge. Autophagy is a route that enables the presentation of cytosolic antigen by MHC class II molecules. Some reports also implicate autophagy in the presentation of extracellular, endocytosed antigen by MHC class I molecules, a pathway termed "cross-presentation." The role of autophagy in cross-presentation is controversial. This may be due to studies using different types of antigen presenting cells for which the use of autophagy is not well defined. Here we report that active use of autophagy is evident only in DC subtypes specialized in cross-presentation. However, the contribution of autophagy to cross-presentation varied depending on the form of antigen: it was negligible in the case of cell-associated antigen or antigen delivered via receptor-mediated endocytosis, but more prominent when the antigen was a soluble protein. These findings highlight the differential use of autophagy and its machinery by primary cells equipped with specific immune function, and prompt careful reassessment of the participation of this endocytic pathway in antigen cross-presentation.
Journal Article•10.1515/HSZ-2014-0320•
The transporter associated with antigen processing: a key player in adaptive immunity

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Sabine Eggensperger1, Robert Tampé1•
Goethe University Frankfurt1
01 Sep 2015-Biological Chemistry
TL;DR: This work summarizes how TAP provides a scaffold for the assembly of the macromolecular PLC, thereby coupling peptide translocation with MHC I loading and highlights the important role of TAP in adaptive immunity.
Abstract: The adaptive immune system co-evolved with sophisticated pathways of antigen processing for efficient clearance of viral infections and malignant transforma- tion. Antigenic peptides are primarily generated by pro- teasomal degradation and translocated into the lumen of the endoplasmic reticulum (ER) by the transporter asso- ciated with antigen processing (TAP). In the ER, peptides are loaded onto major histocompatibility complex I (MHC I) molecules orchestrated by a multisubunit peptide-load- ing complex (PLC). Peptide-MHC I complexes are targeted to the cell surface for antigen presentation to cytotoxic T cells, which eventually leads to the elimination of virally infected or malignantly transformed cells. Here, we review MHC I mediated antigen processing with a primary focus on the function and structural organization of the heter- odimeric ATP-binding cassette (ABC) transporter TAP1/2. We discuss recent data on the molecular transport mecha- nism of the antigen translocation complex with respect to structural and biochemical information of other ABC exporters. We further summarize how TAP provides a scaf- fold for the assembly of the macromolecular PLC, thereby coupling peptide translocation with MHC I loading. TAP inhibition by distinct viral evasins highlights the impor- tant role of TAP in adaptive immunity.
Journal Article•10.1002/GLIA.22873•
Slow degradation in phagocytic astrocytes can be enhanced by lysosomal acidification

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Camilla Lööv1, Claire H. Mitchell2, Martin Simonsson3, Anna Erlandsson4, Anna Erlandsson1 •
Uppsala University Hospital1, University of Pennsylvania2, Luleå University of Technology3, Uppsala University4
01 Nov 2015-Glia
TL;DR: The results show that actin‐rings surround the phagosomes for long periods of time, which physically inhibit the phago‐lysosome fusion, and the degradation was normalized over time, indicating that inhibitory pathways are up‐regulated in response to the enhanced acidification.
Abstract: Inefficient lysosomal degradation is central in the development of various brain disorders, but the underlying mechanisms and the involvement of different cell types remains elusive. We have previously shown that astrocytes effectively engulf dead cells, but then store, rather than degrade the ingested material. In the present study we identify reasons for the slow digestion and ways to accelerate degradation in primary astrocytes. Our results show that actin-rings surround the phagosomes for long periods of time, which physically inhibit the phago-lysosome fusion. Furthermore, astrocytes express high levels of Rab27a, a protein known to reduce the acidity of lysosomes by Nox2 recruitment, in order to preserve antigens for presentation. We found that Nox2 colocalizes with the ingested material, indicating that it may influence antigen processing also in astrocytes, as they express MHC class II. By inducing long-time acidification of astrocytic lysosomes using acidic nanoparticles, we could increase the digestion of astrocyte-ingested, dead cells. The degradation was, however, normalized over time, indicating that inhibitory pathways are up-regulated in response to the enhanced acidification. GLIA 2015;63:1997-2009.
Journal Article•10.3389/FIMMU.2015.00298•
Alternative Antigen Processing for MHC Class I: Multiple Roads Lead to Rome.

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Cláudia C. Oliveira1, Thorbald van Hall1•
Leiden University Medical Center1
05 Jun 2015-Frontiers in Immunology
TL;DR: Interestingly, TAP-deficient individuals do not succumb to viral infections, suggesting that CD8 T cell immunity is sufficiently supported byAlternative peptide routing is an emerging field and includes processes like the unfolded protein response, the ER-associated degradation, and autophagy-associated vesicular pathways.
Abstract: The well described conventional antigen processing pathway is accountable for most peptides that end up in MHC class I molecules at the cell surface. These peptides experienced liberation by the proteasome and transport by the peptide transporter TAP. However, there are multiple roads that lead to Rome, illustrated by the increasing number of alternative processing pathways that have been reported during last years. Interestingly, TAP-deficient individuals do not succumb to viral infections, suggesting that CD8 T cell immunity is sufficiently supported by alternative TAP-independent processing pathways. To date, a diversity of viral and endogenous TAP-independent peptides have been identified in the grooves of different MCH class I alleles. Some of these peptides are not displayed by normal TAP-positive cells and we therefore called them TEIPP, for ‘T-cell epitopes associated with impaired peptide processing’. TEIPPs are hidden self-antigens, are derived from normal housekeeping proteins and are processed via unconventional processing pathways. Per definition, TEIPPs are presented via TAP-independent pathways, but recent data suggest that part of this repertoire still depend on proteasome and metalloprotease activity. An exception is the C-terminal peptide of the ER-membrane spanning ceramide synthase Trh4 that is surprisingly liberated by the signal peptide peptidase (SPP), the proteolytic enzyme involved in cleaving leader sequences. The intramembrane cleaving SPP is thereby an important contributor of TAP-independent peptides. Its family members, like the Alzheimer’s related presenilins, might as well, according to our preliminary data. Finally, alternative peptide routing is an emerging field and includes processes like the unfolded protein response, the ER-associated degradation and autophagy-associated vesicular pathways. These data convince us that there is a world to be discovered in the field of unconventional antigen processing.
Journal Article•10.3389/FIMMU.2015.00335•
Intracellular Transport Routes for MHC I and Their Relevance for Antigen Cross-Presentation.

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Aimé Cézaire Adiko1, Joel Babdor2, Enric Gutiérrez-Martínez3, Pierre Guermonprez3, Loredana Saveanu1, Loredana Saveanu4 •
Paris Diderot University1, Paris Descartes University2, King's College London3, French Institute of Health and Medical Research4
02 Jul 2015-Frontiers in Immunology
TL;DR: The source of cross-presenting MHC I in DCs as well as the role of the endocytic pathway in their recycling from the cell surface are discussed and the importance of the TAP peptide transporter for delivering peptides to M HC I during cross- presentation is described.
Abstract: Cross-presentation, in which exogenous antigens are presented via MHC I complexes, is involved both in the generation of anti-infectious and anti-tumoral cytotoxic CD8+ T cells and in the maintenance of immune tolerance. While cross-presentation was described almost four decades ago and while it is now established that some dendritic cell subsets are better than others in processing and cross-presenting internalized antigens, the involved molecular mechanisms remain only partially understood. Some of the least explored molecular mechanisms in cross-presentation concern the origin of cross-presenting MHC I molecules and the cellular compartments where antigenic peptide loading occurs. This review focuses on MHC I molecules and their intracellular trafficking. We discuss the source of cross-presenting MHC I in dendritic cells as well as the role of the endocytic pathway in their recycling from the cell surface. Next, we describe the importance of the TAP peptide transporter for delivering peptides to MHC I during cross-presentation. Finally, we highlight the impact of innate immunity mechanisms on specific antigen cross-presentation mechanisms in which TLR activation modulates MHC I trafficking and TAP localization.
Patent•
Chimeric antigen receptor

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Martin Pule, Kwee Yong, Lydia Lee, Ben Draper
6 Mar 2015
TL;DR: In this paper, a chimeric antigen receptor (CAR) consisting of a B cell maturation antigen (BCMA)-binding domain which comprises at least part of a proliferation-inducing ligand (APRIL), a spacer domain (iii) a transmembrane domain, and an intracellular T cell signaling domain is presented.
Abstract: The present invention provides a chimeric antigen receptor (CAR) comprising: (i) a B cell maturation antigen (BCMA)-binding domain which comprises at least part of a proliferation-inducing ligand (APRIL); (ii) a spacer domain (iii) a transmembrane domain; and (iv) an intracellular T cell signaling domain. The invention also provides the use of such a T-cell expressing such a CAR in the treatment of plasma-cell mediated diseases, such as multiple myeloma.
Journal Article•10.1111/CEI.12711•
Contribution of enhanced engagement of antigen presentation machinery to the clinical immunogenicity of a human interleukin (IL)-21 receptor-blocking therapeutic antibody

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L Xue1, Timothy P. Hickling1, R Song1, J Nowak1, Bonita Rup1 •
Pfizer1
05 Nov 2015-Clinical and Experimental Immunology
TL;DR: Investigating the immunogenicity of a fully human therapeutic monoclonal antibody, ATR‐107, found that it stimulated an autologous T cell proliferative response in human donor cells, in concert with the detection of immunoglobulin (Ig)G‐type anti‐ATR‐ 107 antibody response in clinical samples.
Abstract: Reliable risk assessment for biotherapeutics requires accurate evaluation of risk factors associated with immunogenicity. Immunogenicity risk assessment tools were developed and applied to investigate the immunogenicity of a fully human therapeutic monoclonal antibody, ATR-107 [anti-interleukin (IL)-21 receptor] that elicited anti-drug antibodies (ADA) in 76% of healthy subjects in a Phase 1 study. Because the ATR-107 target is expressed on dendritic cells (DCs), the immunogenicity risk related to engagement with DC and antigen presentation pathways was studied. Despite the presence of IL-21R on DCs, ATR-107 did not bind to the DCs more extensively than the control therapeutic antibody (PF-1) that had elicited low clinical ADA incidence. However, ATR-107, but not the control therapeutic antibody, was translocated to the DC late endosomes, co-localized with intracellular antigen-D related (HLA-DR) molecules and presented a dominant T cell epitope overlapping the complementarity determining region 2 (CDR2) of the light chain. ATR-107 induced increased DC activation exemplified by up-regulation of DC surface expression of CD86, CD274 (PD-L1) and CD40, increased expansion of activated DC populations expressing CD86(hi), CD40(hi), CD83(hi), programmed death ligand 1 (PD-L1)(hi), HLA-DR(hi) or CCR7(hi), as well as elevated secretion of tumour necrosis factor (TNF)-α by DCs. DCs exposed to ATR-107 stimulated an autologous T cell proliferative response in human donor cells, in concert with the detection of immunoglobulin (Ig)G-type anti-ATR-107 antibody response in clinical samples. Collectively, the enhanced engagement of antigen presentation machinery by ATR-107 was suggested. The approaches and findings described in this study may be relevant to identifying lower immunogenicity risk targets and therapeutic molecules.
Journal Article•10.1002/EJI.201445243•
The proteasome immunosubunits, PA28 and ER-aminopeptidase 1 protect melanoma cells from efficient MART-126-35 -specific T-cell recognition.

[...]

Martin Keller1, Frédéric Ebstein1, Elke Bürger1, Kathrin Textoris-Taube1, Xenia Gorny2, Sabrina Urban1, Fang Zhao3, Tanja Dannenberg3, Antje Sucker3, Christin Keller1, Loredana Saveanu4, Elke Krüger1, Hermann-Josef Rothkötter2, Burkhardt Dahlmann1, Petra Henklein1, Antje Voigt1, Ulrike Kuckelkorn1, Annette Paschen3, Peter-Michael Kloetzel1, Ulrike Seifert1, Ulrike Seifert2 •
Charité1, Otto-von-Guericke University Magdeburg2, University of Duisburg-Essen3, Necker-Enfants Malades Hospital4
19 Oct 2015-European Journal of Immunology
TL;DR: The results provide first evidence that activities of different antigen‐processing components contribute to an inefficient MART‐126‐35 epitope presentation, suggesting the tumor cell's proteolytic machinery might have an important impact on the outcome of epitope‐specific immunotherapies.
Abstract: The immunodominant MART-1(26(27)-35) epitope, liberated from the differentiation antigen melanoma antigen recognized by T cells/melanoma antigen A (MART-1/Melan-A), has been frequently targeted in melanoma immunotherapy, but with limited clinical success. Previous studies suggested that this is in part due to an insufficient peptide supply and epitope presentation, since proteasomes containing the immunosubunits β5i/LMP7 (LMP, low molecular weight protein) or β1i/LMP2 and β5i/LMP7 interfere with MART-1(26-35) epitope generation in tumor cells. Here, we demonstrate that in addition the IFN-γ-inducible proteasome subunit β2i/MECL-1 (multicatalytic endopeptidase complex-like 1), proteasome activator 28 (PA28), and ER-resident aminopeptidase 1 (ERAP1) impair MART-1(26-35) epitope generation. β2i/MECL-1 and PA28 negatively affect C- and N-terminal cleavage and therefore epitope liberation from the proteasome, whereas ERAP1 destroys the MART-1(26-35) epitope by overtrimming activity. Constitutive expression of PA28 and ERAP1 in melanoma cells indicate that both interfere with MART-1(26-35) epitope generation even in the absence of IFN-γ. In summary, our results provide first evidence that activities of different antigen-processing components contribute to an inefficient MART-1(26-35) epitope presentation, suggesting the tumor cell's proteolytic machinery might have an important impact on the outcome of epitope-specific immunotherapies.
Journal Article•10.1128/JVI.03244-14•
Modified Vaccinia Virus Ankara-Infected Dendritic Cells Present CD4+ T-Cell Epitopes by Endogenous Major Histocompatibility Complex Class II Presentation Pathways

[...]

Frank Thiele1, Sha Tao2, Yi Zhang1, Andreas Muschaweckh1, Tina Zollmann3, Ulrike Protzer1, Rubert Abele3, Ingo Drexler2 •
Technische Universität München1, University of Düsseldorf2, Goethe University Frankfurt3
01 Mar 2015-Journal of Virology
TL;DR: This work characterized the MHCII antigen presentation pathways that are possibly involved in the immune response upon vaccination with modified vaccinia virus Ankara (MVA), a promising live viral vaccine vector and identified autophagosome formation, proteasomal activity, and lysosomal integrity as being crucial for endogenous CD4+ T-cell activation.
Abstract: CD4+ T lymphocytes play a central role in the immune system and mediate their function after recognition of their respective antigens presented on major histocompatibility complex II (MHCII) molecules on antigen-presenting cells (APCs). Conventionally, phagocytosed antigens are loaded on MHCII for stimulation of CD4+ T cells. Certain epitopes, however, can be processed directly from intracellular antigens and are presented on MHCII (endogenous MHCII presentation). Here we characterized the MHCII antigen presentation pathways that are possibly involved in the immune response upon vaccination with modified vaccinia virus Ankara (MVA), a promising live viral vaccine vector. We established CD4+ T-cell lines specific for MVA-derived epitopes as tools for in vitro analysis of MHCII antigen processing and presentation in MVA-infected APCs. We provide evidence that infected APCs are able to directly transfer endogenous viral proteins into the MHCII pathway to efficiently activate CD4+ T cells. By using knockout mice and chemical inhibitory compounds, we further elucidated the molecular basis, showing that among the various subcellular pathways investigated, proteasomes and autophagy are key players in the endogenous MHCII presentation during MVA infection. Interestingly, although proteasomal processing plays an important role, neither TAP nor LAMP-2 was found to be involved in the peptide transport. Defining the molecular mechanism of MHCII presentation during MVA infection provides a basis for improving MVA-based vaccination strategies by aiming for enhanced CD4+ T-cell activation by directing antigens into the responsible pathways. IMPORTANCE This work contributes significantly to our understanding of the immunogenic properties of pathogens by deciphering antigen processing pathways contributing to efficient activation of antigen-specific CD4+ T cells. We identified autophagosome formation, proteasomal activity, and lysosomal integrity as being crucial for endogenous CD4+ T-cell activation. Since poxvirus vectors such as MVA are already used in clinical trials as recombinant vaccines, the data provide important information for the future design of optimized poxviral vaccines for the study of advanced immunotherapy options.
Journal Article•10.1016/J.MOLIMM.2015.04.007•
A central role for HSC70 in regulating antigen trafficking and MHC class II presentation.

[...]

Sarah N. Deffit1, Janice S. Blum1•
Indiana University1
01 Dec 2015-Molecular Immunology
TL;DR: An abundant, constitutively expressed cytoplasmic chaperone, HSC70 may serve as a molecular switch to modulate endocytic and autophagy pathways, impacting the source of antigens delivered for MHC class II presentation during cellular stress.
Journal Article•10.1091/MBC.E14-09-1373•
Polarity protein Par3 controls B-cell receptor dynamics and antigen extraction at the immune synapse.

[...]

Anne Reversat1, Maria-Isabel Yuseff1, Maria-Isabel Yuseff2, Danielle Lankar1, Odile Malbec1, Dorian Obino1, Mathieu Maurin1, Naga Venkata Gayathri Penmatcha1, Alejandro Amoroso3, Alejandro Amoroso1, Lucie Sengmanivong1, Gregg G. Gundersen4, Ira Mellman5, François Darchen6, Claire Desnos6, Paolo Pierobon1, Ana-Maria Lennon-Duménil1 •
Curie Institute1, Pontifical Catholic University of Chile2, San Sebastián University3, Columbia University4, Genentech5, Paris Descartes University6
01 Apr 2015-Molecular Biology of the Cell
TL;DR: Ancestral polarity protein Par3 is crucial for the polarization of B-cells toward a tethered antigen and is needed by these lymphocytes to uptake and process the antigen to mount the adaptive immune response.
Abstract: B-cell receptor (BCR) engagement with surface-tethered antigens leads to the formation of an immune synapse, which facilitates antigen uptake for presentation to T-lymphocytes. Antigen internalization and processing rely on the early dynein-dependent transport of BCR–antigen microclusters to the synapse center, as well as on the later polarization of the microtubule-organizing center (MTOC). MTOC repositioning allows the release of proteases and the delivery of MHC class II molecules at the synapse. Whether and how these events are coordinated have not been addressed. Here we show that the ancestral polarity protein Par3 promotes BCR–antigen microcluster gathering, as well as MTOC polarization and lysosome exocytosis, at the synapse by facilitating local dynein recruitment. Par3 is also required for antigen presentation to T-lymphocytes. Par3 therefore emerges as a key molecule in the coupling of the early and late events needed for efficient extraction and processing of immobilized antigen by B-cells.
Journal Article•10.1016/J.COI.2014.12.006•
Modulation of antigen presentation by intracellular trafficking.

[...]

Justine D. Mintern1, Christophe Macri1, Jose A Villadangos1•
University of Melbourne1
01 Jun 2015-Current Opinion in Immunology
TL;DR: Advances in understanding how antigen efficiently accesses the MHC II loading compartment are summarized, with particular focus on the role of autophagy.
Journal Article•10.1002/EJI.201445156•
Redirecting soluble antigen for MHC class I cross‐presentation during phagocytosis

[...]

Aswin Hari1, Anutosh Ganguly1, Libing Mu2, Shevaun P. Davis1, Melanie D. Stenner1, Raymond Lam1, Fay Munro1, Inana Namet1, Enaam Alghamdi1, Tobias Fürstenhaupt1, Wei Dong1, Pascal Detampel1, Lian Jun Shen3, Matthias Amrein1, Robin M. Yates1, Yan Shi1, Yan Shi2 •
University of Calgary1, Tsinghua University2, University of Massachusetts Medical School3
01 Feb 2015-European Journal of Immunology
TL;DR: It is reported that mouse dendritic cell engagement to a phagocytic target alters endocytic processing and inhibits the proteolytic activities, and external soluble antigens are targeted into the MHC class I cross‐presentation pathway.
Abstract: Peptides presented by MHC class I molecules are mostly derived from proteins synthesized by the antigen-presenting cell itself, while peptides presented by MHC class II molecules are predominantly from materials acquired by endocytosis. External antigens can also be presented by MHC class I molecules in a process referred to as cross-presentation. Here, we report that mouse dendritic cell (DC) engagement to a phagocytic target alters endocytic processing and inhibits the proteolytic activities. During phagocytosis, endosome maturation is delayed, shows less progression toward the lysosome, and the endocytosed soluble antigen is targeted for MHC class I cross-presentation. The antigen processing in these arrested endosomes is under the control of NAPDH oxidase associated ROS. We also show that cathepsin S is responsible for the generation of the MHC class I epitope. Taken together, our results suggest that in addition to solid structure uptake, DC phagocytosis simultaneously modifies the kinetics of endosomal trafficking and maturation. As a consequence, external soluble antigens are targeted into the MHC class I cross-presentation pathway.
Journal Article•10.1111/IMM.12417•
The presence of interleukin-27 during monocyte-derived dendritic cell differentiation promotes improved antigen processing and stimulation of T cells.

[...]

Joo-Yong Jung1, Lawton L. Roberts2, Cory M. Robinson3•
Briar Cliff University1, University of South Carolina2, West Virginia School of Osteopathic Medicine3
01 Apr 2015-Immunology
TL;DR: It is shown that IL‐27 treatment during monocyte‐derived DC differentiation enhanced the ability to process antigens and stimulate T‐cell activity, which was important to a wide number of immunological contexts and should be considered in the development of future vaccines.
Abstract: Summary Dendritic cells (DCs) are potent antigen-presenting cells necessary to establish effective adaptive immune responses. The cytokine environment that exists at the time of DC differentiation may be an important but often ignored determinant in the phenotypic and functional properties of DCs. Interleukin-27 (IL-27) is a unique cytokine that has both inflammatory and immune suppressive activities. Although it can both promote and oppose activity of different T-cell subsets, mostly anti-inflammatory activity has been described toward macrophages and DCs. However, the specific effect of IL-27 during DC differentiation and how that may change the nature of the antigen-presenting cell has not been investigated. In this report, we show that IL-27 treatment during monocyte-derived DC differentiation enhanced the ability to process antigens and stimulate T-cell activity. DCs differentiated in the presence of IL-27 showed enhanced acidification of latex bead-containing phagosomes that was consistent with elevated expression of vacuolar-ATPases. This resulted in inhibition of intracellular growth of Staphylococcus aureus. In addition, the levels of MHC class II surface expression were higher in DCs differentiated in the presence of IL-27. Production of IL-12 was also significantly increased during S. aureus infection of IL-27-differentiated DCs. The net effect of these activities was enhanced CD4+ T-cell proliferation and T helper type 1 cytokine production. These findings are important to a wide number of immunological contexts and should be considered in the development of future vaccines.
Journal Article•10.1016/J.MOLIMM.2015.07.018•
Exogenous antigens bind MHC class II first, and are processed by cathepsins later.

[...]

Scheherazade Sadegh-Nasseri1, AeRyon Kim1•
Johns Hopkins University1
01 Dec 2015-Molecular Immunology
TL;DR: This work makes an effort to tease out the sequence of events in antigen processing that promote selection of immunodominant epitopes for exogenous antigens.
Journal Article•10.1016/J.JCONREL.2014.11.032•
Photosensitisation facilitates cross-priming of adjuvant-free protein vaccines and stimulation of tumour-suppressing CD8 T cells

[...]

Monika Håkerud1, Pål Kristian Selbo2, Ying Waeckerle-Men1, Emmanuel Contassot1, Piotr Dziunycz1, Thomas M. Kündig1, Anders Høgset, Pål Johansen1 •
University of Zurich1, Oslo University Hospital2
28 Jan 2015-Journal of Controlled Release
TL;DR: This work applied photosensitiser and light to trigger disruption of antigen-containing endosomes and thereby MHC class I cross-presentation of a model cancer vaccine, which suppressed tumour growth by infiltrating CD8 T cells and caspase-3-dependent apoptosis.
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