TL;DR: The phylogeny of Amolops was investigated by maximum parsimony, Bayesian Inference, and maximum likelihood methods using two mitochondrial DNA fragments and supported a sister group relationship of Amlops ricketti and Amolop hainanensis.
Abstract: In order to evaluate the five species groups of Chinese Amolops based on morphological characteristics, and to clarify the phylogenetic position of the concave-eared torrent frog Amolops tormotus, we investigated the phylogeny of Amolops by maximum parsimony, Bayesian Inference, and maximum likelihood methods using two mitochondrial DNA fragments (12S rRNA, 16S rRNA). Our results supported a sister group relationship of Amolops ricketti and Amolops hainanensis. However, the grouping of Amolops mantzorum and Amolops monticola needs to be resolved with more data. Amolops tormotus was nested in genus Odorrana. Thus, recognition of the A. tormotus group is unwarranted and A. tormotus should be referred to genus Odorrana as O. tormota. This species is the sister group of O. nasica plus O. versabilis. The new classification implies that the genus Wurana is to be considered as junior subjective synonym of Odorrana.
TL;DR: Divergence-time estimates align the speciation events with the recent intense uplift of the Tibetan Plateau in the last 3.6 million years, and reveals different habitat preferences among species that are potentially linked to climatic changes associated with the uplift.
TL;DR: The geographic locations, morphometric measurements (in some cases), time when they were seen in their habitat and information on who have collected the data of the species reported are provided.
Abstract: Thirteen new species of anurans that include six dicroglossids (Euphlyctis cyanophlyctis, Fejervarya pierrei, F. teraiensis and F. nepalensis, from Samdrup Jongkhar, Nanorana conaensis and N. pleskei from Haa), three megophryids (Xenophrys major and X. glandulosa from Trashiyangtse, and X. minor from Mongar) and four ranids (Amolops mantzorum from Trashiyangtse, Hylarana taipehensis and Sylvirana leptoglossa from Samdrup Jongkhar and S. cf. guentheri from Mongar) and one testudine a geoemydid (Melanochelys trijuga from Sarpang), one sauria an anguid (Ophisaurus gracilis from Zhemgang) and two colubrids (Amphiesma platyceps and Dinodon gammiei both from Paro) are reported for the first time from Bhutan. Discussions have been restricted to their presence and the distribution in and outside Bhutan. As such, this paper provides the geographic locations, morphometric measurements (in some cases), time when they were seen in their habitat and information on who have collected the data of the species reported. The quality of the data is highly variable being collected opportunistically by various individuals from various places over the last six years.
TL;DR: All the probes detected centromeric regions in all karyotypes, suggesting the presence of a satellite DNA family derived from 5S rDNA, which was contrasting with other frogs or fishes recorded to date.
Abstract: In an attempt to extend the knowledge of the 5S rDNA organization in anurans, the 5S rDNA sequences of Amolops mantzorum were isolated, characterized, and mapped by FISH. Two forms of 5S rDNA, type I (209 bp) and type II (about 870 bp), were found in specimens investigated from various populations. Both of them contained a 118-bp coding sequence, readily differentiated by their non-transcribed spacer (NTS) sizes and compositions. Four probes (the 5S rDNA coding sequences, the type I NTS, the type II NTS, and the entire type II 5S rDNA sequences) were respectively labeled with TAMRA or digoxigenin to hybridize with mitotic chromosomes for samples of all localities. It turned out that all probes showed the same signals that appeared in every centromeric region and in the telomeric regions of chromosome 5, without differences within or between populations. Obviously, both type I and type II of the 5S rDNA arrays arranged in tandem, which was contrasting with other frogs or fishes recorded to date. More interestingly, all the probes detected centromeric regions in all karyotypes, suggesting the presence of a satellite DNA family derived from 5S rDNA.
TL;DR: The complete nucleotide sequence of the A. mantzorum mitogenome was determined and this mt gene arrangement seems to be usable as a molecular maker to distinguish to this species from other species in the genus Amolops.
Abstract: Sichuan torrent frog, Amolops mantzorum (family Ranidae, suborder Neobatrachia), possesses heteromorphic sex chromosomes unusual characteristics among amphibians. We determined the complete nucleotide sequence of the A. mantzorum mitogenome. This genome is 17,744 bp in length and contains 37 genes, 1 control region, and 1 light strand replication origin typically found in vertebrate mtDNAs. In the A. mantzorum mitogenome, a novel gene arrangement is observed within the WANCY tRNA gene cluster region. This mt gene arrangement seems to be usable as a molecular maker to distinguish to this species from other species in the genus Amolops.