Proceedings Article10.1109/SCIVIS.2015.7429506
Visualizing crossing probabilistic tracts
Mathias Goldau,Andre Reichenbach,Mario Hlawitschka +2 more
- 25 Oct 2015
- pp 147-148
2
TL;DR: This work suggests a visualization based on Fiber-Stippling but sensible to multiple diffusion orientations from HARDI-based diffusion models, which implies that tract crossings may now be visualized as crossing stipples, which is an essential step towards an accurate visualization of the neuroanatomy.
read more
Abstract: Diffusion weighted magnetic resonance imaging (dMRI) together with tractography algorithms allow to probe for principal white matter tracts in the living human brain. Specifically, probabilistic tractography quantifies the existence of physical connections to a given seed region as a 3D scalar map of confidence scores. Fiber-Stippling is a visualization for probabilistic tracts that effectively communicates the diffusion pattern, connectivity score, and anatomical context. Unfortunately, it cannot handle multiple diffusion orientations per voxel, which exist in high angular resolution diffusion imaging (HARDI) data. Such data is needed to resolve tracts in complex configurations, such as crossings. In this work, we suggest a visualization based on Fiber-Stippling but sensible to multiple diffusion orientations from HARDI-based diffusion models. With such a technique, it is now possible to visualize probabilistic tracts from HARDI-based tractography algorithms. This implies that tract crossings may now be visualized as crossing stipples, which is an essential step towards an accurate visualization of the neuroanatomy, as crossing tracts are widespread phenomena in the brain.
read more
Chat with Paper
AI Agents for this Paper
Find similar papers on Google Scholar, PubMed and Arxiv
Write a critical review of this paper
Analyze citations of this paper to find unaddressed research gaps
Citations
Fiber Stippling: An Illustrative Rendering for Probabilistic Diffusion Tractography Combinatorial Vector Field Topology in 3 Dimensions
Mathias Goldau,Alexander Wiebel,Nico S. Gorbach,Corina Melzer,Mario Hlawitschka,Gerik Scheuermann,Marc Tittgemeyer +6 more
- 01 Jan 2011
TL;DR: This paper presents a novel and effective method for visualizing probabilistic tractograms within their anatomical context and demonstrates its expressiveness and intuitive usability as well as a more objective way to present white-matter structure in the human brain.
8
Stick Stippling for Joint 3D Visualization of Diffusion MRI Fiber Orientations and Density
TL;DR: This approach provides a new way to explore diffusion MRI datasets that may aid in the visual analysis of white matter fiber architecture and microstructure and is available in the Quantitative Imaging Toolkit (QIT).
1
References
Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?
TL;DR: It is shown that multi-fibre tractography offers significant advantages in sensitivity when tracking non-dominant fibre populations, but does not dramatically change tractography results for the dominant pathways.
3.7K
•Book
Fiber Pathways of the Brain
Jeremy D. Schmahmann,Deepak N. Pandya +1 more
- 11 Feb 2009
TL;DR: Schmahmann and Pandya as mentioned in this paper analyzed and synthesized the corticocortical and corticosubcortical connections of the major areas of the cerebral cortex of the rhesus monkey.
1.1K
Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom.
Pierre Fillard,Maxime Descoteaux,Alvina Goh,Sylvain Gouttard,Ben Jeurissen,James G. Malcolm,Alonso Ramirez-Manzanares,Marco Reisert,Kenneth Earl Sakaie,F. Tensaouti,Ting Yo,Jean-François Mangin,Cyril Poupon +12 more
TL;DR: A common dataset with known ground truth and a reproducible methodology to quantitatively evaluate the performance of various diffusion models and tractography algorithms is used and evidence that diffusion models such as (fiber) orientation distribution functions correctly model the underlying fiber distribution is provided.
459
QuickBundles, a Method for Tractography Simplification
Eleftherios Garyfallidis,Eleftherios Garyfallidis,Matthew Brett,Marta M Correia,Guy B. Williams,Ian Nimmo-Smith +5 more
TL;DR: A simple, compact, tailor-made clustering algorithm, QuickBundles (QB), that overcomes the complexity of these large data sets and provides informative clusters in seconds and can help in the search for similarities across several subjects.
Probabilistic streamline q-ball tractography using the residual bootstrap
Jeffrey I. Berman,SungWon Chung,Pratik Mukherjee,Christopher P. Hess,Eric T. Han,Roland G. Henry +5 more
TL;DR: The proposed residual bootstrap method utilizes a spherical harmonic representation for high angular resolution diffusion imaging (HARDI) data in order to estimate the uncertainty in multimodal q-ball reconstructions.
174