Journal Article10.1016/J.CBPA.2006.09.021
Unnatural base pair systems for DNA/RNA-based biotechnology.
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TL;DR: The development of unnatural, extra base pairs could expand genetic information, by enabling the site-specific incorporation of functional components into nucleic acids and proteins, including the base pairs, substrates and polymerase enzymes.
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About: This article is published in Current Opinion in Chemical Biology. The article was published on 01 Dec 2006. The article focuses on the topics: Base pair.
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Citations
C-nucleosides: synthetic strategies and biological applications.
TL;DR: While natural and synthetic N-nucleosides are vulnerable to enzymatic and acid-catalyzed hydrolysis of the nucleosidic bond, their C-analogues are much more stable and have found numerous applications in medicinal chemistry and chemical biology.
326
Nucleoside, nucleotide and oligonucleotide based amphiphiles: a successful marriage of nucleic acids with lipids.
TL;DR: This Perspective highlightsphiphilic molecules based on nucleosides, nucleotides and oligonucleotides, their synthesis, supramolecular organization as well as their applications in the field of biotechnology.
169
Reversible bond formation enables the replication and amplification of a crosslinking salen complex as an orthogonal base pair
TL;DR: Crystal structures of a dS-Cu-dS base pair inside a polymerase show that reversible chemistry is possible directly inside the polymerase, which enables the efficient copying of the inorganic crosslink and opens up the possibility of replicating and amplifying artificial inorganic DNA nanostructures by extending the genetic alphabet.
Polypeptoids: a model system to study the effect of monomer sequence on polymer properties and self-assembly
TL;DR: In this paper, the authors summarize the developments in establishing a relationship between a polymer's sequence and its properties, and focus on one sequence-specific polymer system in particular: N-substituted glycines or polypeptoids.
An Efficient Unnatural Base Pair for PCR Amplification
TL;DR: A new pair between 7-(2-thienyl)imidazo[4,5-b]pyridine and 2-nitropyrrole, which functions in DNA amplification, more selectively pairs with Ds in replication than another previously reported pairing partner, pyrrole-2-carbaldehyde (Pa).
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References
Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet
TL;DR: A new Watson-Crick base pair, with a hydrogen bonding pattern different from that in the A·T and G·C base pairs, is incorporated into duplex DNA and RNA byDNA and RNA polymerases and expands the genetic alphabet from 4 to 6 letters.
694
Enzymatic incorporation of a new base pair into DNA and RNA
TL;DR: D-iso-G was found at the correct position in the product oligonucleotide by a “nearest-neighbor” analysis9 and by the “minus” sequencing method of Sanger to determine the specificity with which the new bases pair.
410
An unnatural base pair for incorporating amino acid analogs into proteins
Ichiro Hirao,Takashi Ohtsuki,Tsuyoshi Fujiwara,Tsuneo Mitsui,Tomoko Yokogawa,Taeko Okuni,Hiroshi Nakayama,Koji Takio,Takashi Yabuki,Takanori Kigawa,Koichiro Kodama,Takashi Yokogawa,Kazuya Nishikawa,Shigeyuki Yokoyama +13 more
TL;DR: This coupled transcription–translation system will permit the efficient synthesis of proteins with a tyrosine analog at the desired position in an Escherichia coli cell-free system.
365
Efficient replication between non-hydrogen-bonded nucleoside shape analogs
Juan C. Morales,Eric T. Kool +1 more
TL;DR: It is established that hydrogen bonds in a base pair are not absolutely required for efficient nucleotide insertion, adding support to the idea that shape complementarity may play as important a role in replication as base–base hydrogen bonds.
301
Beyond A, C, G and T: augmenting nature’s alphabet
TL;DR: A critical comparison of the third base pair candidates is provided and the further work required to expand the genetic alphabet is discussed.
278