Terpene Biosynthesis: Modularity Rules
Eric Oldfield,Fu Yang Lin +1 more
TL;DR: Progress in determining the structure and function of the two 4Fe-4S reductases involved in formation of the C(5) diphosphates in many bacteria, where highly modular structures are found are reviewed.
read more
Abstract: Terpenes are the largest class of small-molecule natural products on earth, and the most abundant by mass. Here, we summarize recent developments in elucidating the structure and function of the proteins involved in their biosynthesis. There are six main building blocks or modules (α, β, γ, δ, e, and ζ) that make up the structures of these enzymes: the αα and αδ head-to-tail trans-prenyl transferases that produce trans-isoprenoid diphosphates from C(5) precursors; the e head-to-head prenyl transferases that convert these diphosphates into the tri- and tetraterpene precursors of sterols, hopanoids, and carotenoids; the βγ di- and triterpene synthases; the ζ head-to-tail cis-prenyl transferases that produce the cis-isoprenoid diphosphates involved in bacterial cell wall biosynthesis; and finally the α, αβ, and αβγ terpene synthases that produce plant terpenes, with many of these modular enzymes having originated from ancestral α and β domain proteins. We also review progress in determining the structure and function of the two 4Fe-4S reductases involved in formation of the C(5) diphosphates in many bacteria, where again, highly modular structures are found.
read more
Chat with Paper
AI Agents for this Paper
Find similar papers on Google Scholar, PubMed and Arxiv
Write a critical review of this paper
Analyze citations of this paper to find unaddressed research gaps
Citations
Structural and Chemical Biology of Terpenoid Cyclases.
TL;DR: Key advances in terpenoid cyclase structural and chemical biology are reviewed, focusing mainly on ter penoid cyclases and related prenyltransferases for which X-ray crystal structures have informed and advanced the authors' understanding of enzyme structure and function.
893
Review on plant antimicrobials: a mechanistic viewpoint
TL;DR: The main antibiotic resistance mechanisms of bacteria are summarized and how phytochemicals belonging to different chemical classes could reverse the antibiotic resistance are discussed.
Triterpene Biosynthesis in Plants
TL;DR: Recent developments in the field of triterpene biosynthesis are reviewed, an overview of the genes and enzymes that have been identified to date are given, and strategies for discovering new triterpenes pathways are discussed.
682
Terpenes and terpenoids as main bioactive compounds of essential oils, their roles in human health and potential application as natural food preservatives
Ayu Masyita,Reka Mustika Sari,Ayun Dwi Astuti,Budiman Yasir,Nur Rahma Rumata,Talha Bin Emran,Firzan Nainu,Jesus Simal-Gandara +7 more
TL;DR: In this paper , the authors present an overview of current knowledge of essential oils for application in pharmaceutical and medical industries as well as their potential as food preservatives in food industry, and present a review of the potential of EOs in the food industry.
508
Towards Advances in Medicinal Plant Antimicrobial Activity: A Review Study on Challenges and Future Perspectives.
Natalia Vaou,Elisavet Stavropoulou,C. Voidarou,Christina Tsigalou,Eugenia Bezirtzoglou +4 more
- 27 Sep 2021
TL;DR: In this article, a review of the antimicrobial activity of plant-derived components, their possible mechanisms of action, as well as their chemical potential, is presented, where the focus is put on the current challenges and future perspectives surrounding medicinal plants antimicrobial efficacy.
497
References
Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.
Richard A. Friesner,Jay L. Banks,Robert B. Murphy,Thomas A. Halgren,Jasna Klicic,Daniel T. Mainz,Matthew P. Repasky,Eric H. Knoll,Mee Shelley,Jason K. Perry,David E. Shaw,Perry Francis,Peter S Shenkin +12 more
TL;DR: Glide approximates a complete systematic search of the conformational, orientational, and positional space of the docked ligand to find the best docked pose using a model energy function that combines empirical and force-field-based terms.
I-TASSER: a unified platform for automated protein structure and function prediction
TL;DR: The iterative threading assembly refinement (I-TASSER) server is an integrated platform for automated protein structure and function prediction based on the sequence- to-structure-to-function paradigm.
Protein structure prediction on the Web: a case study using the Phyre server.
TL;DR: This protocol provides a guide to interpreting the output of structure prediction servers in general and one such tool in particular, the protein homology/analogy recognition engine (Phyre), which can reliably detect up to twice as many remote homologies as standard sequence-profile searching.
The SWISS-MODEL Repository and associated resources
TL;DR: The aim of the SWISS-MODEL Repository is to provide access to an up-to-date collection of annotated 3D protein models generated by automated homology modelling for all sequences in Swiss-Prot and for relevant models organisms.
2.1K
Van der Waals Radii of Elements
TL;DR: In this paper, the authors summarized the available data on the van der Waals radii of atoms in molecules and crystals and discussed the mechanisms of transformations between these types of chemical bonding.
1.6K