Journal Article10.1007/s11517-024-03163-3
Radiomics of pituitary adenoma using computer vision: a review.
Tomas Zilka,Wanda Benesova +1 more
2
TL;DR: This survey offers an analysis of the current state of research in PA radiomics through a systematic review of 34 publications focused on PA radiomics and other automated information mining pertaining to PA through the analysis of radiological data using computer vision methods.
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Abstract: Pituitary adenomas (PA) represent the most common type of sellar neoplasm. Extracting relevant information from radiological images is essential for decision support in addressing various objectives related to PA. Given the critical need for an accurate assessment of the natural progression of PA, computer vision (CV) and artificial intelligence (AI) play a pivotal role in automatically extracting features from radiological images. The field of “Radiomics” involves the extraction of high-dimensional features, often referred to as “Radiomic features,” from digital radiological images. This survey offers an analysis of the current state of research in PA radiomics. Our work comprises a systematic review of 34 publications focused on PA radiomics and other automated information mining pertaining to PA through the analysis of radiological data using computer vision methods. We begin with a theoretical exploration essential for understanding the theoretical background of radionmics, encompassing traditional approaches from computer vision and machine learning, as well as the latest methodologies in deep radiomics utilizing deep learning (DL). Thirty-four research works under examination are comprehensively compared and evaluated. The overall results achieved in the analyzed papers are high, e.g., the best accuracy is up to 96% and the best achieved AUC is up to 0.99, which establishes optimism for the successful use of radiomic features. Methods based on deep learning seem to be the most promising for the future. In relation to this perspective DL methods, several challenges are remarkable: It is important to create high-quality and sufficiently extensive datasets necessary for training deep neural networks. Interpretability of deep radiomics is also a big open challenge. It is necessary to develop and verify methods that will explain to us how deep radiomic features reflect various physics-explainable aspects.
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The role of preoperative MRI assessment of pituitary adenoma consistency and invasiveness
M.Yu. Kurnukhina,V. Yu. Cherebillo,Borisov Ae,G. V. Gavrilov,V. N. Ochkolyas +4 more
Abstract: Objective — to determine the role of preoperative neuroimaging parameters of invasiveness and consistency of pituitary adenoma. Material and methods. The present clinical study included 100 patients with a histologically confirmed diagnosis of pituitary adenoma. The average age of the subjects was 54.7 ± 18.8 years. At the preoperative stage, the diagnosis was based on clinical data, laboratory results, and neuroimaging research methods. The present study included an analysis of MR predictors of invasiveness and consistency of pituitary adenoma at the preoperative stage, with intraoperative confirmation. The Knosp Scale (1993) was used to assess laterosellar spread, and the Hardy and Vezina classification (1976) was used to assess suprasellar spread. Intraoperative assessment of pituitary adenoma consistency was carried out according to the classification of M. J. Rutkowski et al. (2020). Results. Among the surgical tactics selected for all patients, transsphenoidal endoscopic approach was used. Radical resection was achieved in 84 % of cases (N=84), subtotal — in 16 % (N=16). According to control MRI data 3‑6 months after surgical treatment, all subtotally operated patients showed continued tumor growth at different times, which subsequently required repeat transsphenoidal resection (in 14 %), and in 2 % — transcranial removal through a lateral supraorbital approach. No relationship was found with histological tumor subtypes, proliferative activity index ki-67 values, or immunohistochemical study results. Soft consistency of pituitary adenoma was predominantly encountered among the subjects (53 %), medium and dense consistency — less often (18 and 25 %, respectively). T1‑isointense MR signal is a predictor of intraoperatively softer density of pituitary adenoma (r=0.4; p=0.03). Hyperintense T2 signal in combination with increased PT and INR values indicates soft density of pituitary adenoma (p<0.001). Preoperative combination of laterosellar growth into the cavernous sinus (Knosp Scale 3‑4) and suprasellar spread (Hardy and Vezina 3‑4) indicates a high probability of subtotal tumor removal (p<0.05). Conclusions. Prediction of the fibrous residual supra- or laterosellar tumor fragment at the preoperative stage allows not only to determine the correct surgical approach, but also to determine the timing of follow-up examinations and the feasibility of radiosurgical treatment.
Fusing Radiomic Features with Deep Representations for Gestational Age Estimation in Fetal Ultrasound Images
Fangyijie Wang,Yuan Liang,Sourav Bhattacharjee,Abey Campbell,Kathleen M. Curran +4 more
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TL;DR: This report describes the process of radiomics, its challenges, and its potential power to facilitate better clinical decision making, particularly in the care of patients with cancer.
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The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
Bjoern H. Menze,Andras Jakab,Stefan Bauer,Jayashree Kalpathy-Cramer,Keyvan Farahani,Justin Kirby,Yuliya Burren,N Porz,Johannes Slotboom,Roland Wiest,Levente Lanczi,Elizabeth R. Gerstner,Marc-André Weber,Tal Arbel,Brian B. Avants,Nicholas Ayache,Patricia Buendia,D. Louis Collins,Nicolas Cordier,Jason J. Corso,Antonio Criminisi,Tilak Das,Hervé Delingette,Çağatay Demiralp,Christopher R. Durst,Michel Dojat,Senan Doyle,Joana Festa,Florence Forbes,Ezequiel Geremia,Ben Glocker,Polina Golland,Xiaotao Guo,Andac Hamamci,Khan M. Iftekharuddin,Raj Jena,Nigel M. John,Ender Konukoglu,Danial Lashkari,José Mariz,Raphael Meier,Sérgio Pereira,Doina Precup,Stephen J. Price,Tammy Riklin Raviv,Syed M. S. Reza,Michael Ryan,Duygu Sarikaya,Lawrence H. Schwartz,Hoo-Chang Shin,Jamie Shotton,Carlos A. Silva,Nuno Sousa,Nagesh K. Subbanna,Gábor Székely,Thomas J. Taylor,Owen M. Thomas,Nicholas J. Tustison,Gozde Unal,Flor Vasseur,Max Wintermark,Dong Hye Ye,Liang Zhao,Binsheng Zhao,Darko Zikic,Marcel Prastawa,Mauricio Reyes,Koen Van Leemput +67 more
TL;DR: The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) as mentioned in this paper was organized in conjunction with the MICCAI 2012 and 2013 conferences, and twenty state-of-the-art tumor segmentation algorithms were applied to a set of 65 multi-contrast MR scans of low and high grade glioma patients.
Computational Radiomics System to Decode the Radiographic Phenotype
Joost J. M. van Griethuysen,Joost J. M. van Griethuysen,Joost J. M. van Griethuysen,Andriy Fedorov,Chintan Parmar,Ahmed Hosny,Nicole Aucoin,Vivek Narayan,Regina G. H. Beets-Tan,Regina G. H. Beets-Tan,Jean-Christophe Fillion-Robin,Steve Pieper,Hugo J.W.L. Aerts +12 more
TL;DR: PyRadiomics, a flexible open-source platform capable of extracting a large panel of engineered features from medical images, is developed and its application in characterizing lung lesions is demonstrated.
The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping
Alex Zwanenburg,Alex Zwanenburg,Martin Vallières,Mahmoud A. Abdalah,Hugo J.W.L. Aerts,Hugo J.W.L. Aerts,Vincent Andrearczyk,Aditya Apte,Saeed Ashrafinia,Spyridon Bakas,Roelof J. Beukinga,Ronald Boellaard,Marta Bogowicz,Luca Boldrini,Irène Buvat,Gary Cook,Christos Davatzikos,Adrien Depeursinge,Marie-Charlotte Desseroit,Nicola Dinapoli,Cuong V. Dinh,Sebastian Echegaray,Issam El Naqa,Issam El Naqa,Andriy Fedorov,Roberto Gatta,Robert J. Gillies,Vicky Goh,Michael Götz,Matthias Guckenberger,Sung Min Ha,Mathieu Hatt,Fabian Isensee,Philippe Lambin,Stefan Leger,Stefan Leger,Ralph T.H. Leijenaar,Jacopo Lenkowicz,Fiona Lippert,Are Losnegård,Klaus H. Maier-Hein,Olivier Morin,Henning Müller,Sandy Napel,Christophe Nioche,Fanny Orlhac,Sarthak Pati,Elisabeth Pfaehler,Arman Rahmim,Arman Rahmim,Arvind Rao,Jonas Scherer,Muhammad Siddique,Nanna M. Sijtsema,Jairo Socarras Fernandez,Emiliano Spezi,Roel J H M Steenbakkers,Stephanie Tanadini-Lang,Daniela Thorwarth,Esther G.C. Troost,Esther G.C. Troost,Taman Upadhaya,Vincenzo Valentini,Lisanne V. van Dijk,Joost J. M. van Griethuysen,Floris H. P. van Velden,Philip Whybra,Christian Richter,Christian Richter,Steffen Löck,Steffen Löck +70 more
TL;DR: A set of 169 radiomics features was standardized, which enabled verification and calibration of different radiomics software and could be excellently reproduced.
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