Partial differential equation transform—Variational formulation and Fourier analysis
TL;DR: The variational formulation, performs the Fourier analysis, and conducts biomedical and biological applications of the proposed PDE transform, which offers an algorithm to incorporate two image functions and two sets of low-pass PDE operators in the total energy functional.
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Abstract: Nonlinear partial differential equation (PDE) models are established approaches for image/signal processing, data analysis and surface construction. Most previous geometric PDEs are utilized as low-pass filters which give rise to image trend information. In an earlier work, we introduced mode decomposition evolution equations (MoDEEs), which behave like high-pass filters and are able to systematically provide intrinsic mode functions (IMFs) of signals and images. Due to their tunable time-frequency localization and perfect reconstruction, the operation of MoDEEs is called a PDE transform. By appropriate selection of PDE transform parameters, we can tune IMFs into trends, edges, textures, noise etc., which can be further utilized in the secondary processing for various purposes. This work introduces the variational formulation, performs the Fourier analysis, and conducts biomedical and biological applications of the proposed PDE transform. The variational formulation offers an algorithm to incorporate two image functions and two sets of low-pass PDE operators in the total energy functional. Two low-pass PDE operators have different signs, leading to energy disparity, while a coupling term, acting as a relative fidelity of two image functions, is introduced to reduce the disparity of two energy components. We construct variational PDE transforms by using Euler-Lagrange equation and artificial time propagation. Fourier analysis of a simplified PDE transform is presented to shed light on the filter properties of high order PDE transforms. Such an analysis also offers insight on the parameter selection of the PDE transform. The proposed PDE transform algorithm is validated by numerous benchmark tests. In one selected challenging example, we illustrate the ability of PDE transform to separate two adjacent frequencies of sin(x) and sin(1.1x). Such an ability is due to PDE transform's controllable frequency localization obtained by adjusting the order of PDEs. The frequency selection is achieved either by diffusion coefficients or by propagation time. Finally, we explore a large number of practical applications to further demonstrate the utility of proposed PDE transform.
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References
•Book
A wavelet tour of signal processing
Stéphane Mallat
- 01 Jan 1998
TL;DR: An introduction to a Transient World and an Approximation Tour of Wavelet Packet and Local Cosine Bases.
20.3K
Nonlinear total variation based noise removal algorithms
TL;DR: In this article, a constrained optimization type of numerical algorithm for removing noise from images is presented, where the total variation of the image is minimized subject to constraints involving the statistics of the noise.
17.3K
Ten Lectures on Wavelets
TL;DR: In this article, the regularity of compactly supported wavelets and symmetry of wavelet bases are discussed. But the authors focus on the orthonormal bases of wavelets, rather than the continuous wavelet transform.
14.2K
Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations
Stanley Osher,James A. Sethian +1 more
TL;DR: The PSC algorithm as mentioned in this paper approximates the Hamilton-Jacobi equations with parabolic right-hand-sides by using techniques from the hyperbolic conservation laws, which can be used also for more general surface motion problems.
14K
Scale-space and edge detection using anisotropic diffusion
Pietro Perona,Jitendra Malik +1 more
TL;DR: A new definition of scale-space is suggested, and a class of algorithms used to realize a diffusion process is introduced, chosen to vary spatially in such a way as to encourage intra Region smoothing rather than interregion smoothing.