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Partial Correlation Estimation by Joint Sparse Regression Models
TL;DR: In this article, the authors proposed a computationally efficient approach called space(Sparse PArtial Correlation Estimation) for selecting non-zero partial correlations under the high-dimension-low-sample-size setting.
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Abstract: In this paper, we propose a computationally efficient approach -- space(Sparse PArtial Correlation Estimation)-- for selecting non-zero partial correlations under the high-dimension-low-sample-size setting. This method assumes the overall sparsity of the partial correlation matrix and employs sparse regression techniques for model fitting. We illustrate the performance of space by extensive simulation studies. It is shown that space performs well in both non-zero partial correlation selection and the identification of hub variables, and also outperforms two existing methods. We then apply space to a microarray breast cancer data set and identify a set of hub genes which may provide important insights on genetic regulatory networks. Finally, we prove that, under a set of suitable assumptions, the proposed procedure is asymptotically consistent in terms of model selection and parameter estimation.
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Citations
Estimating time-varying networks
TL;DR: In this paper, the authors present two machine learning methods for estimating time-varying networks, which both build on a temporally smoothed $l_1$-regularized logistic regression formalism that can be cast as a standard convexoptimization problem and solved efficiently using generic solvers scalable to large networks.
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Estimating time-varying networks
TL;DR: In this paper, a temporally smoothed l 1-regularized logistic regression formalism is proposed to estimate time-varying networks from time series of entity attributes, which can be cast as a standard convex optimization problem and solved efficiently using generic solvers scalable to large networks.
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Regression Shrinkage and Selection via the Lasso
TL;DR: A new method for estimation in linear models called the lasso, which minimizes the residual sum of squares subject to the sum of the absolute value of the coefficients being less than a constant, is proposed.
Emergence of Scaling in Random Networks
TL;DR: A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
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The Structure and Function of Complex Networks
TL;DR: Developments in this field are reviewed, including such concepts as the small-world effect, degree distributions, clustering, network correlations, random graph models, models of network growth and preferential attachment, and dynamical processes taking place on networks.
Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
Jianqing Fan,Runze Li +1 more
TL;DR: In this article, penalized likelihood approaches are proposed to handle variable selection problems, and it is shown that the newly proposed estimators perform as well as the oracle procedure in variable selection; namely, they work as well if the correct submodel were known.
Least angle regression
Bradley Efron,Trevor Hastie,Iain M. Johnstone,Robert Tibshirani,Hemant Ishwaran,Keith Knight,Jean-Michel Loubes,Jean-Michel Loubes,Pascal Massart,Pascal Massart,David Madigan,David Madigan,Greg Ridgeway,Greg Ridgeway,Saharon Rosset,Saharon Rosset,Ji Zhu,Robert A. Stine,Berwin A. Turlach,Sanford Weisberg +19 more
TL;DR: A publicly available algorithm that requires only the same order of magnitude of computational effort as ordinary least squares applied to the full set of covariates is described.