Journal Article10.1038/s41477-023-01402-3
Parallel evolution of cannabinoid biosynthesis
Paula Berman,Luis Alejandro de Haro,Adam Jozwiak,Sayantan Panda,Jelena Cvetićanin,Ranjit S. Barbole,Tali Scherf,Eyal Shimoni,Smadar Levin-Zaidman,Nili Dezorella,Ekaterina Petrovich-Kopitman,Sagit Meir,Ilana Rogachev,Prashant D. Sonawane,Asaph Aharoni +14 more
35
TL;DR: A cannabinoid biosynthetic pathway is revealed in Helichrysum umbraculigerum, a plant genetically distant from Cannabis, providing a potential source of new cannabinoids and metabolic engineering tools and tools for engineering in heterologous hosts.
read more
About: This article is published in Nature plants. The article was published on 01 May 2023. The article focuses on the topics: Medicine & Cannabinoid.
read more
Chat with Paper
AI Agents for this Paper
Find similar papers on Google Scholar, PubMed and Arxiv
Write a critical review of this paper
Analyze citations of this paper to find unaddressed research gaps
Citations
Medicinal plants meet modern biodiversity science
Charles C. Davis,Patrick Choisy +1 more
TL;DR: Interdisciplinary research on medicinal plants combining evolutionary ecology, molecular biology/biochemistry, and ethnopharmacology holds promise for new breakthroughs in science and human health.
20
Cannabis sativa: origin and history, glandular trichome development, and cannabinoid biosynthesis.
Ziyan Xie,Yaolei Mi,Lingzhe Kong,Maolun Gao,Shanshan Chen,Weiqiang Chen,Xiangxiao Meng,Wei-wei Sun,Shilin Chen,Zhichao Xu +9 more
TL;DR: A comprehensive understanding of the underlying mechanism of cannabinoid biosynthesis is necessary to cultivate and promote globally the medicinal application of Cannabis resources and provide valuable insights into the efficient biosynthesis and green production of cannabinoids.
16
Haplotype-phased genome unveils the butylphthalide biosynthesis and homoploid hybrid origin of Ligusticum chuanxiong
Bao Nie,Xueqing Chen,Zhuangwei Hou,Miaoxian Guo,Chengchen Li,Wenkai Sun,Jiaojiao Ji,Lanlan Zang,Song Yang,Pengxiang Fan,Wen-Hao Zhang,Hang Li,Yuzhu Tan,Wei Li,Li Wang +14 more
TL;DR: This study is an icebreaker for the dissection of phthalide biosynthetic pathway and reveals the hybrid origin of L. chuanxiong, which will facilitate the metabolic engineering for (S)-3-n-butylphthalide production and breeding for L. chuanxiong.
12
Sesquiterpene Lactones – Insights into Biosynthesis, Regulation and Signalling Roles
Maximilian Frey,Khabat Vahabi,Katarina Cankar,Nathalie D. Lackus,Federico Padilla-Gonzalez,Dae-Kyun Ro,Loren Rieseberg,Otmar Spring,Alain Tissier +8 more
TL;DR: Sesquiterpene lactones are plant specialized metabolites with diverse biosynthetic, regulatory and signalling roles. They are derived from farnesyl pyrophosphate and are found in many plant families, especially Asteraceae. Recent findings have dramatically changed our knowledge about their biosynthesis and regulation.
9
Cannabinoids function in defense against chewing herbivores in Cannabis sativa L.
George M. Stack,Stephen I Snyder,Jacob A. Toth,Michael A. Quade,Jamie L Crawford,John K McKay,John Nicholas Jackowetz,Ping Wang,Glenn Philippe,Julie L Hansen,Virginia M Moore,Jocelyn K C Rose,Lawrence B Smart +12 more
TL;DR: The hypothesis that cannabinoids function in defense against chewing herbivores is supported, with results supporting the prediction that genotypes with greater concentrations of cannabinoids will have reduced herbivory.
6
References
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms,Steven L. Kelly +1 more
TL;DR: This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative genomics statistics.
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms,Steven L. Kelly +1 more
TL;DR: This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted genes trees, gene duplication events, the rooted species tree, and comparative genomic statistics.
3.1K
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
TL;DR: Hifiasm as discussed by the authors is a de novo assembler that takes advantage of long high-fidelity sequence reads to faithfully represent the haplotype information in a phased assembly graph.
2.7K
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Shujun Ou,Weija Su,Yi Liao,Kapeel Chougule,Jireh Agda,Adam J. Hellinga,Carlos Santiago Blanco Lugo,Tyler A. Elliott,Doreen Ware,Doreen Ware,Thomas Peterson,Ning Jiang,Candice N. Hirsch,Matthew B. Hufford +13 more
TL;DR: A comprehensive pipeline called Extensive de-novo TE Annotator (EDTA) is created that produces a filtered non-redundant TE library for annotation of structurally intact and fragmented elements and will greatly facilitate TE annotation in eukaryotic genomes.
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith Bradnam,Joseph Fass,Anton Alexandrov,Paul Baranay,Michael Bechner,Inanc Birol,Sébastien Boisvert,Jarrod Chapman,Guillaume Chapuis,Guillaume Chapuis,Rayan Chikhi,Rayan Chikhi,Hamidreza Chitsaz,Wen-Chi Chou,Jacques Corbeil,Cristian Del Fabbro,Roderick R. Docking,Richard Durbin,Dent Earl,Scott J. Emrich,Pavel Fedotov,Nuno A. Fonseca,Ganeshkumar Ganapathy,Richard A. Gibbs,Sante Gnerre,Elenie Godzaridis,Steve Goldstein,Matthias Haimel,Giles Hall,David Haussler,Joseph B. Hiatt,Isaac Ho,Jason T. Howard,Martin Hunt,Shaun D. Jackman,David B. Jaffe,Erich D. Jarvis,Huaiyang Jiang,Sergey Kazakov,Paul J. Kersey,Jacob O. Kitzman,James R. Knight,Sergey Koren,Tak-Wah Lam,Dominique Lavenier,Dominique Lavenier,Dominique Lavenier,François Laviolette,Yingrui Li,Zhenyu Li,Binghang Liu,Yue Liu,Ruibang Luo,Iain MacCallum,Matthew D. MacManes,Nicolas Maillet,Nicolas Maillet,Sergey Melnikov,Delphine Naquin,Delphine Naquin,Zemin Ning,Thomas D. Otto,Benedict Paten,Octávio S. Paulo,Adam M. Phillippy,Francisco Pina-Martins,Michael Place,Dariusz Przybylski,Xiang Qin,Carson Qu,Filipe J. Ribeiro,Stephen Richards,Daniel S. Rokhsar,Daniel S. Rokhsar,J. Graham Ruby,J. Graham Ruby,Simone Scalabrin,Michael C. Schatz,David C. Schwartz,Alexey Sergushichev,Ted Sharpe,Timothy I. Shaw,Jay Shendure,Yujian Shi,Jared T. Simpson,Henry Song,Fedor Tsarev,Francesco Vezzi,Riccardo Vicedomini,Bruno Vieira,Jun Wang,Kim C. Worley,Shuangye Yin,Siu-Ming Yiu,Jianying Yuan,Guojie Zhang,Hao Zhang,Shiguo Zhou,Ian F Korf +98 more
TL;DR: The Assemblathon 2 as discussed by the authors presented a variety of sequence data to be assembled for three vertebrate species (a bird, a fish, and a snake) from 21 participating teams.