Journal Article10.1063/1.455864
Nonequilibrium solvation effects on reaction rates for model SN2 reactions in water
317
TL;DR: In this paper, the generalized Langevin equation (GLE)-based Grote-Hynes (GH) theory was used to assess the validity of the GLE-based GLE.
read more
Abstract: Molecular dynamics (MD) simulations of the model SN2 reaction Cl−+CH3Cl→ClCH3+Cl− in water, and variants thereof, are presented. The resulting transmission coefficients κ, that measure the deviations of the rates from the transition state theory (TST) rate predictions due to solvent‐induced recrossings, are used to assess the validity of the generalized Langevin equation (GLE)‐based Grote–Hynes (GH) theory. The GH predictions are found to agree with the MD results to within the error bars of the calculations for each of the 12 cases examined. This agreement extends from the nonadiabatic regime, where solvent molecule motions are unimportant and κ is determined by static solvent configurations at the transition state, into the polarization caging regime, where solvent motion is critical in determining κ. In contrast, the Kramers theory predictions for κ fall well below the simulation results. The friction kernel in the GLE used to evaluate the GH κ values is determined, from MD simulation, by a fixed‐particle time correlation function of the force at the transition state. When this is expressed as a (Fourier) friction spectrum in frequency, marked similarities to the pure solvent spectrum are observed, and are used to identify the water solvent motions that determine the transmission coefficient κ. The deviations of κ from unity, the TST value, are dominated by solvent motions (translational and reorientational) which on the time scale of the recrossings are essentially static configurations. The deviations from the frozen solvent, nonadiabatic limit values κNA are dominated by the hinderd rotations (librations). Finally, the underlying assumptions of the GLE and the GH theory are discussed within the context of the simulation results.
read more
Chat with Paper
AI Agents for this Paper
Find similar papers on Google Scholar, PubMed and Arxiv
Write a critical review of this paper
Analyze citations of this paper to find unaddressed research gaps
Citations
Communication: An existence test for dividing surfaces without recrossing
TL;DR: An easily implemented test employing deterministic microcanonical (NVE) trajectories is described which can identify situations where no perfect dividing surface exists and thereby potentially falsify the claim of equivalence.
Dynamic Solvent Effects on Electron-Transfer Reactions
TL;DR: In this paper, a review of the modern developments in the theory and experimental study of electron transfer processes is given, and it is shown that solvent dynamics may lead to a whole plethora of phenomena in reaction dynamics.
A coupled reference interaction site model/molecular dynamics study of the potential of mean force curve of the SN2 Cl- + CH3Cl reaction in water.
Holly Freedman,Thanh N. Truong +1 more
TL;DR: The results indicate that the coupled RISM/simulation method provides a cost-effective methodology for studying reactions in solution.
The notion of error in langevin dynamics. i. linear analysis
Bimal Mishra,Tamar Schlick +1 more
TL;DR: In this article, the authors examine the behavior of various implicit and explicit finite-difference algorithms for the Langevin equation and derive local stability criteria for these integrators; analytical expressions for the averages of the potential, kinetic, and total energy; and various limiting cases (e.g., timestep and damping constant approaching zero), for a system of coupled harmonic oscillators.
Effect of microsolvation on the OH−(H2O)n + CH3I rate constant. comparison of experiment and calculations for OH−(H2O)2 + CH3I
TL;DR: In this article, the authors determined the rate constant for the selected ion flow tube (SIFT) experiments for the S N 2 barrier at temperatures in the range of 298-398 K and showed that the barrier height is sensitive to the electronic structure method.
References
•Book
Computer Simulation of Liquids
Michael P. Allen,D. J. Tildesley +1 more
- 11 Feb 1988
TL;DR: In this paper, the gear predictor -corrector is used to calculate forces and torques in a non-equilibrium molecular dynamics simulation using Monte Carlo methods. But it is not suitable for the gear prediction problem.
22.7K
Brownian motion in a field of force and the diffusion model of chemical reactions
TL;DR: In this article, a particle which is caught in a potential hole and which, through the shuttling action of Brownian motion, can escape over a potential barrier yields a suitable model for elucidating the applicability of the transition state method for calculating the rate of chemical reactions.
•Book
RANDOM DATA Analysis and Measurement Procedures
Julius S. Bendat,Allan G. Piersol +1 more
- 01 Jan 1971
TL;DR: A revised and expanded edition of this classic reference/text, covering the latest techniques for the analysis and measurement of stationary and nonstationary random data passing through physical systems, is presented in this article.
7.4K