Journal Article10.1063/1.455864
Nonequilibrium solvation effects on reaction rates for model SN2 reactions in water
317
TL;DR: In this paper, the generalized Langevin equation (GLE)-based Grote-Hynes (GH) theory was used to assess the validity of the GLE-based GLE.
read more
Abstract: Molecular dynamics (MD) simulations of the model SN2 reaction Cl−+CH3Cl→ClCH3+Cl− in water, and variants thereof, are presented. The resulting transmission coefficients κ, that measure the deviations of the rates from the transition state theory (TST) rate predictions due to solvent‐induced recrossings, are used to assess the validity of the generalized Langevin equation (GLE)‐based Grote–Hynes (GH) theory. The GH predictions are found to agree with the MD results to within the error bars of the calculations for each of the 12 cases examined. This agreement extends from the nonadiabatic regime, where solvent molecule motions are unimportant and κ is determined by static solvent configurations at the transition state, into the polarization caging regime, where solvent motion is critical in determining κ. In contrast, the Kramers theory predictions for κ fall well below the simulation results. The friction kernel in the GLE used to evaluate the GH κ values is determined, from MD simulation, by a fixed‐particle time correlation function of the force at the transition state. When this is expressed as a (Fourier) friction spectrum in frequency, marked similarities to the pure solvent spectrum are observed, and are used to identify the water solvent motions that determine the transmission coefficient κ. The deviations of κ from unity, the TST value, are dominated by solvent motions (translational and reorientational) which on the time scale of the recrossings are essentially static configurations. The deviations from the frozen solvent, nonadiabatic limit values κNA are dominated by the hinderd rotations (librations). Finally, the underlying assumptions of the GLE and the GH theory are discussed within the context of the simulation results.
read more
Chat with Paper
AI Agents for this Paper
Find similar papers on Google Scholar, PubMed and Arxiv
Write a critical review of this paper
Analyze citations of this paper to find unaddressed research gaps
Citations
Spectroscopic Study of the Br−+CH3I→I−+CH3Br SN2 Reaction
Hayden T. Robinson,Timothy R. Corkish,Christian T. Haakansson,Peter D. Watson,Allan J. McKinley,Duncan A. Wild +5 more
TL;DR: In this article , high-level CCSD(T) calculations have been used to investigate the reaction intermediates that may form as a result of the SN2 reaction along various different reaction pathways, including back side attack and front side attack.
Reaction dynamics for heavy particle charge transfer reactions in polar solvents and ion dielectric friction
A.M. Berezhkovskii,S.A. Dudko +1 more
TL;DR: In this article, the authors applied the theory of a solvent's influence on heavy particle charge transfer reactions in polar solvents with complex frequency-dependent dielectric constant to solve the problem of treating the friction on a moving ion, and demonstrated a relation between the approach used in the theory and other approaches used for treating solute-solvent Coulomb interactions.
3
Second-order perturbational treatment of normal coordinates in the string model for the hydration reaction of formaldehyde
TL;DR: In this paper, a perturbation theory for normal coordinates of nonadiabatic solvation is presented by means of the string model of chemical reactions, and the dynamic normal coordinate is introduced for the perturbational treatment of the intrinsic reaction coordinate that are orthogonal to the reaction path.
3
A Simple Model for Barrier Frequencies for Enzymatic Reactions
TL;DR: A simple model can be used to understand the changes in the reaction barrier frequencies of an enzymatic catalyzed reaction and the corresponding uncatalyzed process in aqueous solution, a change which has implications for dynamical environmental effects on the enzyme reaction.
2
References
•Book
Computer Simulation of Liquids
Michael P. Allen,D. J. Tildesley +1 more
- 11 Feb 1988
TL;DR: In this paper, the gear predictor -corrector is used to calculate forces and torques in a non-equilibrium molecular dynamics simulation using Monte Carlo methods. But it is not suitable for the gear prediction problem.
22.7K
Brownian motion in a field of force and the diffusion model of chemical reactions
TL;DR: In this article, a particle which is caught in a potential hole and which, through the shuttling action of Brownian motion, can escape over a potential barrier yields a suitable model for elucidating the applicability of the transition state method for calculating the rate of chemical reactions.
•Book
RANDOM DATA Analysis and Measurement Procedures
Julius S. Bendat,Allan G. Piersol +1 more
- 01 Jan 1971
TL;DR: A revised and expanded edition of this classic reference/text, covering the latest techniques for the analysis and measurement of stationary and nonstationary random data passing through physical systems, is presented in this article.
7.4K