Book Chapter10.1007/978-0-387-84870-9_3
Introduction to Algorithms
Senthilkumar Radhakrishnan,Deepak Kolippakkam,Venkatarajan S. Mathura +2 more
- 01 Jan 2009
- pp 27-37
864
TL;DR: This chapter provides an introduction to different methods like clustering, hypothesis -testing, and classification methods, which are often used in biological sequence and other data analysis.
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Abstract: Computational methods are designed to solve complex problems systematically and efficiently. Classification and selection procedures are often used in biological sequence and other data analysis. This chapter provides an introduction to different methods like clustering, hypothesis -testing, and classification methods.
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Analysis of Fundamentals of Two-Phase Flow in Porous Media Using Dynamic Pore-Network Models: A Review
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A review on renewable energy and electricity requirement forecasting models for smart grid and buildings
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366
An Evolutionary Multiobjective Approach for Community Discovery in Dynamic Networks
Francesco Folino,Clara Pizzuti +1 more
TL;DR: The detection of communities with temporal smoothness is formulated as a multiobjective problem and a method based on genetic algorithms is proposed and the main advantage of the algorithm is that it automatically provides a solution representing the best trade-off between the accuracy of the clustering obtained, and the deviation from one time step to the successive.
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Knowledge-based analysis of microarray gene expression data by using support vector machines
Michael S. Brown,William Noble Grundy,David Lin,Nello Cristianini,Charles W. Sugnet,Terrence S. Furey,Manuel Ares,David Haussler +7 more
TL;DR: In this paper, a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments is introduced based on the theory of support vector machines (SVMs).
Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia.
Yaron Hakak,John R. Walker,Cheng Li,Wing Hung Wong,Kenneth L. Davis,Joseph D. Buxbaum,Vahram Haroutunian,Allen A. Fienberg +7 more
TL;DR: DNA microarray analysis was used to assay gene expression levels in postmortem dorsolateral prefrontal cortex of schizophrenic and control patients, and differential expression of myelination-related genes suggesting a disruption in oligodendrocyte function in schizophrenia were identified.
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Bounds on Error Expectation for Support Vector Machines
Vladimir Vapnik,Olivier Chapelle +1 more
TL;DR: It is proved that the value of the span is always smaller (and can be much smaller) than the diameter of the smallest sphere containing the support vectors, used in previous bounds.
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Design of a genome-wide siRNA library using an artificial neural network.
Dieter Huesken,Joerg Lange,Craig Mickanin,Jan Weiler,Fred A.M. Asselbergs,Justin Warner,Brian Meloon,Sharon Engel,Avi Rosenberg,Dalia Cohen,Mark Labow,Mischa Reinhardt,Francois Natt,Jonathan Hall +13 more
TL;DR: The Stuttgart Neural Net Simulator was used to train algorithms on a data set of 2,182 randomly selected siRNAs targeted to 34 mRNA species, assayed through a high-throughput fluorescent reporter gene system and BIOPREDsi was used in the design of a genome-wide siRNA collection with two potent si RNAs per gene.
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