Human Protein Reference Database
About: This article is published in Nature Reviews Molecular Cell Biology. The article was published on 01 Jan 2004. and is currently open access. The article focuses on the topics: Human Protein Reference Database.
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Citations
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Damian Szklarczyk,Andrea Franceschini,Michael Kuhn,Milan Simonovic,Alexander Roth,Pablo Minguez,Tobias Doerks,Manuel Stark,Jean Muller,Peer Bork,Lars Juhl Jensen,Christian von Mering +11 more
TL;DR: An update on the online database resource Search Tool for the Retrieval of Interacting Genes (STRING), which provides uniquely comprehensive coverage and ease of access to both experimental as well as predicted interaction information.
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The molecular portraits of breast tumors are conserved across microarray platforms
Zhiyuan Hu,Cheng Fan,Daniel S. Oh,James Stephen Marron,Xiaping He,Bahjat F. Qaqish,Chad A. Livasy,Lisa A. Carey,Evangeline R Reynolds,Lynn G. Dressler,Andrew B. Nobel,Joel S. Parker,Matthew G. Ewend,Lynda R. Sawyer,Junyuan Wu,Yudong Liu,Rita Nanda,Maria Tretiakova,Alejandra Ruiz Orrico,Donna Dreher,Juan P. Palazzo,Laurent Perreard,Edward W. Nelson,Mary C. Mone,Heidi Theil Hansen,Michael Mullins,John Quackenbush,Matthew J. Ellis,Olufunmilayo I. Olopade,Philip S. Bernard,Charles M. Perou +30 more
TL;DR: This study validates the "breast tumor intrinsic" subtype classification as an objective means of tumor classification that should be translated into a clinical assay for further retrospective and prospective validation.
A Protocol for Exosome Isolation and Characterization: Evaluation of Ultracentrifugation, Density-Gradient Separation, and Immunoaffinity Capture Methods
TL;DR: This chapter reveals the protocol and key insights into the isolation, purification and characterization of exosomes, distinct from shed microvesicles and apoptotic blebs, and concludes that density-based separation (DG-Exos) provides significant advantages for exosome isolation when the use of immunoaffinity capture is limited.
662
Predicting protein function from sequence and structure
TL;DR: There is an increasing number of noteworthy methods for predicting protein function from sequence and structural data alone, many of which are readily available to cell biologists who are aware of the strengths and pitfalls of each available technique.
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ConsensusPathDB—a database for integrating human functional interaction networks
TL;DR: The functionality of the ConsensusPathDB web interface is described, where users can search and visualize interaction networks, upload, modify and expand networks in BioPAX, SBML or PSI-MI format, or carry out over-representation analysis with uploaded identifier lists with respect to substructures derived from the integrated interaction network.
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