Journal Article10.1111/CBDD.13388
Homology modeling in drug discovery: Overview, current applications, and future perspectives.
296
TL;DR: There has been the clarification of protein interactions using 3D structures of proteins that are built with homology modeling, which contributes to the identification of novel drug candidates.
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Abstract: Homology modeling is one of the computational structure prediction methods that are used to determine protein 3D structure from its amino acid sequence. It is considered to be the most accurate of the computational structure prediction methods. It consists of multiple steps that are straightforward and easy to apply. There are many tools and servers that are used for homology modeling. There is no single modeling program or server which is superior in every aspect to others. Since the functionality of the model depends on the quality of the generated protein 3D structure, maximizing the quality of homology modeling is crucial. Homology modeling has many applications in the drug discovery process. Since drugs interact with receptors that consist mainly of proteins, protein 3D structure determination, and thus homology modeling is important in drug discovery. Accordingly, there has been the clarification of protein interactions using 3D structures of proteins that are built with homology modeling. This contributes to the identification of novel drug candidates. Homology modeling plays an important role in making drug discovery faster, easier, cheaper, and more practical. As new modeling methods and combinations are introduced, the scope of its applications widens.
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Citations
Design and Screening of KLHL22 Inhibitors by Homology Modeling, Molecular Docking, and Molecular Dynamics Simulation
TL;DR: In this paper , the structure of the KLHL22 protein was predicted by homology modeling and the model was evaluated by Ramachandran Plot and Profile-3D, and the results of ADMET prediction performed on them showed good druggability.
Target-template relationships in protein structure prediction and their effect on the accuracy of thermostability calculations
Dmitry Lupyan
- 19 Sep 2022
TL;DR: In this article , a free energy perturbation implementation of FEP+ was applied to homology models of 12 different proteins covering 316 mutations, and the results showed that local rather than global sequence conservation between target and template sequence is a determining factor in the accuracy of predictions.
Unraveling the Mechanisms of Cannabidiol’s Pharmacological Actions: A Comprehensive Research Overview
Iqra Kalsoom,Kiran Shehzadi,Hansheng Li,Hongmei Wen,M. Yu +4 more
Proteins and Peptides Studied In Silico and In Vivo for the Treatment of Diabetes Mellitus: A Systematic Review
Isaiane Medeiros,Ana Francisca Teixeira Gomes,Emilly Guedes Oliveira e Silva,Ingrid Wilza Leal Bezerra,Juliana Kelly da Silva-Maia,Grasiela Piuvezam,Ana Heloneida de Araújo Morais +6 more
TL;DR: The in silico studies outlined offer crucial insights into therapeutic strategies for DM, along with promising leads for screening novel therapeutic agents in future trials.
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