Fungal functional ecology: bringing a trait-based approach to plant-associated fungi.
Amy E. Zanne,Kessy Abarenkov,Michelle E. Afkhami,Carlos A. Aguilar-Trigueros,Scott T. Bates,Jennifer M. Bhatnagar,Posy E. Busby,Natalie Christian,Natalie Christian,William K. Cornwell,Thomas W. Crowther,Habacuc Flores-Moreno,Dimitrios Floudas,Romina Gazis,David S. Hibbett,Peter G. Kennedy,Daniel L. Lindner,Daniel S. Maynard,Amy M. Milo,Rolf Henrik Nilsson,Jeff R. Powell,Mark Schildhauer,Jonathan S. Schilling,Kathleen K. Treseder +23 more
TL;DR: This review synthesizes current knowledge of fungal functional ecology, taxonomy and systematics and introduces a novel database offungal functional traits (FunFun), built to interface with other databases to explore and predict how fungalfunctional diversity varies by taxonomy, guild, and other evolutionary or ecological grouping variables.
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Abstract: Fungi play many essential roles in ecosystems. They facilitate plant access to nutrients and water, serve as decay agents that cycle carbon and nutrients through the soil, water and atmosphere, and are major regulators of macro-organismal populations. Although technological advances are improving the detection and identification of fungi, there still exist key gaps in our ecological knowledge of this kingdom, especially related to function. Trait-based approaches have been instrumental in strengthening our understanding of plant functional ecology and, as such, provide excellent models for deepening our understanding of fungal functional ecology in ways that complement insights gained from traditional and -omics-based techniques. In this review, we synthesize current knowledge of fungal functional ecology, taxonomy and systematics and introduce a novel database of fungal functional traits (FunFun ). FunFun is built to interface with other databases to explore and predict how fungal functional diversity varies by taxonomy, guild, and other evolutionary or ecological grouping variables. To highlight how a quantitative trait-based approach can provide new insights, we describe multiple targeted examples and end by suggesting next steps in the rapidly growing field of fungal functional ecology.
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References
•Journal Article
R: A language and environment for statistical computing.
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
410.8K
Fitting Linear Mixed-Effects Models Using lme4
TL;DR: In this article, a model is described in an lmer call by a formula, in this case including both fixed-and random-effects terms, and the formula and data together determine a numerical representation of the model from which the profiled deviance or the profeatured REML criterion can be evaluated as a function of some of model parameters.
•Posted Content
Fitting Linear Mixed-Effects Models using lme4
TL;DR: In this article, a model is described in an lmer call by a formula, in this case including both fixed-and random-effects terms, and the formula and data together determine a numerical representation of the model from which the profiled deviance or the profeatured REML criterion can be evaluated as a function of some of model parameters.
44.4K
The Theory of Island Biogeography
TL;DR: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols used xiii 1.
14.1K
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