Journal Article10.1016/J.BIOSYSTEMS.2009.04.010
Evidence for transcriptase quantum processing implies entanglement and decoherence of superposition proton states.
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TL;DR: Data imply that natural selection at the quantum level has generated effective schemes for introducing superposition proton states--at rates appropriate for DNA evolution--in decoherence-free subspaces and for creating entanglement states that augment (i) transcriptase quantum processing and (ii) efficientDecoherence for accurate Topal-Fresco replication.
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Abstract: Evidence requiring transcriptase quantum processing is identified and elementary quantum methods are used to qualitatively describe origins and consequences of time-dependent coherent proton states populating informational DNA base pair sites in T4 phage, designated by G–C → G′–C′, G–C → *G–*C and AT → *A–*T. Coherent states at these ‘point’ DNA lesions are introduced as consequences of hydrogen bond arrangement, keto–amino → enol–imine, where product protons are shared between two sets of indistinguishable electron lone-pairs, and thus, participate in coupled quantum oscillations at frequencies of ∼1013 s−1. This quantum mixing of proton energy states introduces stability enhancements of ∼0.25–7 kcal/mole. Transcriptase genetic specificity is determined by hydrogen bond components contributing to the formation of complementary interstrand hydrogen bonds which, in these cases, is variable due to coupled quantum oscillations of coherent enol–imine protons. The transcriptase deciphers and executes genetic specificity instructions by implementing measurements on superposition proton states at G′–C′, *G–*C and *A–*T sites in an interval Δt ≪ 10−13 s. After initiation of transcriptase measurement, model calculations indicate proton decoherence time, τD, satisfies the relation Δt
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Citations
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Entanglement Evolution in the Presence of Decoherence
TL;DR: In this paper, the entanglement of two qubits, each defined as an effective two-level spin 1/2 system, is investigated for the case that the qubits interact via a Heisenberg XY interaction and are subject to decoherence due to population relaxation and thermal effects.
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A biophysical approach to cancer dynamics: Quantum chaos and energy turbulence.
TL;DR: A holistic model of mathematical oncology has been provided to identify key signaling pathways required for the phenotypic reprogramming of cancer through an epigenetic landscape and will also serve as a mathematical guide to understand the cancer interactome by interlinking theoretical and experimental oncologists.
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Quantum biology and human carcinogenesis.
TL;DR: This paper discusses the intersection between quantum mechanics, biology, adaptive evolution, and cancer, and presents general models by which adaptive mutation may influence neoplastic initiation and progression and suggests a model of "quantum cancer".
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Coherent states as consequences of keto-amino→ enol-imine hydrogen bond arrangements driven by quantum uncertainty limits on amino DNA protons
TL;DR: This model illustrates biological consequences of coherent states populating inherited (CAG)n repeats in human genomes by demonstrating the consequences of keto-amino enol-imine arrangement on transcriptase genetic specificity.
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Necessity of Quantum Coherence to Account for the Spectrum of Time-Dependent Mutations Exhibited by Bacteriophage T4
TL;DR: The transcriptase deciphers and executes genetic specificity instructions by implementing measurements on superposition proton states at *G–*C, G′–C′, and *A–*T sites in an interval Δt ≪ 10−13 s, which imply an evolutionary shift favoring A–T richness.
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