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DCAN: Deep Contour-Aware Networks for Accurate Gland Segmentation
TL;DR: An efficient deep contour-aware network (DCAN) to solve this challenging problem under a unified multi-task learning framework and can be efficient when applied to large-scale histopathological data without resorting to additional steps to generate contours based on low-level cues for post-separating.
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Abstract: The morphology of glands has been used routinely by pathologists to assess the malignancy degree of adenocarcinomas. Accurate segmentation of glands from histology images is a crucial step to obtain reliable morphological statistics for quantitative diagnosis. In this paper, we proposed an efficient deep contour-aware network (DCAN) to solve this challenging problem under a unified multi-task learning framework. In the proposed network, multi-level contextual features from the hierarchical architecture are explored with auxiliary supervision for accurate gland segmentation. When incorporated with multi-task regularization during the training, the discriminative capability of intermediate features can be further improved. Moreover, our network can not only output accurate probability maps of glands, but also depict clear contours simultaneously for separating clustered objects, which further boosts the gland segmentation performance. This unified framework can be efficient when applied to large-scale histopathological data without resorting to additional steps to generate contours based on low-level cues for post-separating. Our method won the 2015 MICCAI Gland Segmentation Challenge out of 13 competitive teams, surpassing all the other methods by a significant margin.
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References
•Posted Content
Gland Segmentation in Colon Histology Images: The GlaS Challenge Contest
Korsuk Sirinukunwattana,Josien P. W. Pluim,Hao Chen,Xiaojuan Qi,Pheng-Ann Heng,Yun Bo Guo,Li Yang Wang,Bogdan J. Matuszewski,Elia Bruni,Urko Sanchez,Anton Böhm,Olaf Ronneberger,Bassem Ben Cheikh,Daniel Racoceanu,Philipp Kainz,Philipp Kainz,Michael Pfeiffer,Martin Urschler,David Snead,Nasir M. Rajpoot +19 more
TL;DR: The Gland Segmentation in Colon Histology Images Challenge Contest (GlaS) as mentioned in this paper was held at MICCAI'2015. And the results of the challenge were published in 2015.
14
Automated analysis of PIN-4 stained prostate needle biopsies
TL;DR: The paper presents the different issues related to the automated analysis of prostate needle biopsies and the approach taken by BioImagene in its first generation algorithms.
Structure and context in prostatic gland segmentation and classification
Kien Nguyen,Anindya Sarkar,Anil K. Jain +2 more
- 01 Oct 2012
TL;DR: A novel gland segmentation and classification scheme applied to an H&E histology image of the prostate tissue outperforms state of the art methods in terms of segmentation, classification accuracies and computational efficiency.
Automatic Localization and Identification of Vertebrae in Spine CT via a Joint Learning Model with Deep Neural Networks
Hao Chen,Chiyao Shen,Jing Qin,Dong Ni,Lin Shi,Jack C. Y. Cheng,Pheng-Ann Heng +6 more
- 05 Oct 2015
TL;DR: A novel joint learning model with CNN J-CNN that can effectively identify the type of vertebra and eliminate false detections based on a set of coarse vertebral centroids generated from a random forest classifier.
A boosting cascade for automated detection of prostate cancer from digitized histology
Scott Doyle,Anant Madabhushi,Michael Feldman,J. Tomaszeweski +3 more
- 01 Oct 2006
TL;DR: A CAD system to assist pathologists by automatically detecting prostate cancer from digitized images of prostate histological specimens is presented and the method is robust to choice of training samples, and the multi-scale cascaded approach results in significant savings in computational time.
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