Ancient hybridization fuels rapid cichlid fish adaptive radiations.
Joana I. Meier,David Alexander Marques,David Alexander Marques,Salome Mwaiko,Salome Mwaiko,Catherine E. Wagner,Catherine E. Wagner,Catherine E. Wagner,Laurent Excoffier,Ole Seehausen,Ole Seehausen +10 more
TL;DR: It is demonstrated that hybridization between two divergent lineages facilitated this process by providing genetic variation that subsequently became recombined and sorted into many new species, indicating rapid and extensive adaptive radiation.
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Abstract: Understanding why some evolutionary lineages generate exceptionally high species diversity is an important goal in evolutionary biology. Haplochromine cichlid fishes of Africa’s Lake Victoria region encompass >700 diverse species that all evolved in the last 150,000 years. How this ‘Lake Victoria Region Superflock’ could evolve on such rapid timescales is an enduring question. Here, we demonstrate that hybridization between two divergent lineages facilitated this process by providing genetic variation that subsequently became recombined and sorted into many new species. Notably, the hybridization event generated exceptional allelic variation at an opsin gene known to be involved in adaptation and speciation. More generally, differentiation between new species is accentuated around variants that were fixed differences between the parental lineages, and that now appear in many new combinations in the radiation species. We conclude that hybridization between divergent lineages, when coincident with ecological opportunity, may facilitate rapid and extensive adaptive radiation. Cichlids underwent a rapid diversification in the Lake Victoria region, expanding to more than 700 species within 150,000 years. Here, Meier and colleagues show that an ancient hybridization between two divergent cichlid lineages generated high genetic diversity that facilitated the rapid radiation.
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Citations
A Combinatorial View on Speciation and Adaptive Radiation
David Alexander Marques,David Alexander Marques,Joana I. Meier,Joana I. Meier,Joana I. Meier,Ole Seehausen,Ole Seehausen +6 more
TL;DR: Why old variants are particularly good fuel for rapid speciation, and hypothesize that variation in access to such old variants might contribute to the large variation in speciation rates observed in nature.
Genomic architecture and introgression shape a butterfly radiation
Nathaniel B. Edelman,Paul B. Frandsen,Paul B. Frandsen,Michael Miyagi,Bernardo J. Clavijo,John W. Davey,John W. Davey,Rebecca B. Dikow,Gonzalo García-Accinelli,Steven M. Van Belleghem,Nick Patterson,Nick Patterson,Daniel E. Neafsey,Daniel E. Neafsey,Richard Challis,Sujai Kumar,Gilson R. P. Moreira,Camilo Salazar,Mathieu Chouteau,Brian A. Counterman,Riccardo Papa,Riccardo Papa,Mark Blaxter,Robert D. Reed,Kanchon K. Dasmahapatra,Marcus R. Kronforst,Mathieu Joron,Chris D. Jiggins,W. Owen McMillan,Federica Di Palma,Andrew J. Blumberg,John Wakeley,David B. Jaffe,James Mallet +33 more
TL;DR: Tests to distinguish incomplete lineage sorting from introgression indicate that gene flow has obscured several ancient phylogenetic relationships in this group over large swathes of the genome, and a hitherto unknown inversion that traps a color pattern switch locus is identified.
Insights from genomes into the evolutionary importance and prevalence of hybridization in nature.
Scott A. Taylor,Erica L. Larson +1 more
TL;DR: This Review discusses recent advances in the understanding of the evolutionary importance of ancient hybridization, adaptive introgression, and hybrid speciation brought about by whole genome data of non-model organisms.
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Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
Milan Malinsky,Hannes Svardal,Alexandra M. Tyers,Alexandra M. Tyers,Eric A. Miska,Eric A. Miska,Martin J. Genner,George F. Turner,Richard Durbin +8 more
TL;DR: In this paper, the authors characterized the genomic diversity of cichlid fish in Lake Malawi by sequencing 134 individuals covering 73 species across all major lineages and found that the average sequence divergence between species pairs is only 0.1-0.25%.
Genomic architecture and introgression shape a butterfly radiation
Nathaniel B. Edelman,Paul B. Frandsen,Paul B. Frandsen,Michael Miyagi,Bernardo J. Clavijo,John W. Davey,Rebecca B. Dikow,Gonzalo García-Accinelli,Steven M. Van Belleghem,Nick Patterson,Nick Patterson,Daniel E. Neafsey,Daniel E. Neafsey,Richard Challis,Sujai Kumar,Gilson R. P. Moreira,Camilo Salazar,Mathieu Chouteau,Brian A. Counterman,Riccardo Papa,Mark Blaxter,Robert D. Reed,Kanchon K. Dasmahapatra,Marcus R. Kronforst,Mathieu Joron,Chris D. Jiggins,W. Owen McMillan,Federica Di Palma,Andrew J. Blumberg,John Wakeley,David B. Jaffe,James Mallet +31 more
TL;DR: It is found that most loci with non-canonical histories arose through introgression, and are strongly underrepresented in regions of low recombination and low gene density, and the multi-genome assembly approach enables an improved understanding of adaptive radiation.
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