Open AccessDissertation
An E. coli cell-free transcription- translation system: modeling gene expression and characterizing CRISPR elements and gene circuits
Ryan Marshall
- 01 Sep 2019
2
TL;DR: This dissertation aims to provide a history of particle magnetism in the Large Hadron Collider and some of the techniques used to characterize the fluid mechanics of magnetism.
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Abstract: University of Minnesota Ph.D. dissertation. September 2019. Major: Physics. Advisor: Vincent Noireaux. 1 computer file (PDF); xi, 125 pages.
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Citations
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TL;DR: Enzymatic Carboxyl Activation of Amino Acids (Hoagland, M. B, Keller, E. B., and Zamecnik, P. C.)
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References
Defossiling fuel: how synthetic biology can transform biofuel production.
TL;DR: Calculations suggest that a biofuelbased energy economy is feasible but that enhancements in the efficiency of any step in energy production would be favorable from an economic and environmental standpoint.
RecBCD Enzyme Switches Lead Motor Subunits in Response to χ Recognition
TL;DR: It is suggested that degradation of foreign DNA needs fast translocation, whereas DNA repair uses slower translocation to coordinate RecA loading onto ssDNA.
Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems
TL;DR: It is shown that double-stranded DNA encoding χ sites-eight base-pair sequences preferentially bound by the RecBCD recombination machinery-stabilizes linear DNA and greatly enhances the TXTL-based expression and activity of a fluorescent reporter gene, simple regulatory cascades, and T7 bacteriophage particles.
SnapShot: Class 1 CRISPR-Cas Systems.
TL;DR: Class 1 CRISPR-Cas systems are characterized by effector modules consisting of multiple subunits consisting ofmultiple subunits and can target both DNA and RNA.
Quantitative polysome analysis identifies limitations in bacterial cell‐free protein synthesis
TL;DR: Results demonstrate that polysome analysis is a valid tool to characterize cell-free translation and to identify limiting steps, that dilution of translation factors is a limitation of CFPS, and that CFPS is a useful platform for making novel observations about translation.