Additional file 1 of Genome-wide association analysis reveals a novel QTL CsPC1 for pericarp color in cucumber

Abstract: Additional file 1: Supplementary Figure S1. Eight categories of pericarp colors were defined to evaluate phenotypes of 289 cucumber accessions. aWhite, b Yellow-white, c White-green, d Yellow-green, eLight-green, f Green, g Dark-green, h Black-green. Supplementary Figure S2. The phenotype of the light-green near isogenic line NIL-1334 and the dark-green near isogenicline NIL-1325. Supplementary Figure S3. Relativeexpression of three candidate genes in pericarp of the light-green nearisogenic line NIL-1334 and the dark-green near isogenic line NIL-1325 at 0 dayspost-anthesis (DPA), 5 DPA, and 10 DPA. The relative expression is shown as themean ± standard deviation, and statistical significance was determined usingStudent’s t-tests (*P < 0.05). Supplementary TableS1. QTL analysis of pericarp color in the cucumberF2 population. Supplementary Table S2. Information on 15 candidate genes between 39,531,980 and 39,626,163 bpon chromosome 3. Supplementary TableS3. Information on35 KASP SNP markers for QTL analysis. Supplementary Table S4. Primers used in qRT-PCR. Supplementary TableS5. The phenotype of theF2 population (278). Supplementary TableS6. The phenotypeof the natural population used for GWAS (289).